| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | Acan | Hard coral |
| Acropora arabensis | AcArab | Hard coral |
| Acropora clathrata | AcClath | Hard coral |
| Acropora downingi | AcDown | Hard coral |
| Acanthastrea echinata | AcEch | Hard coral |
| Acropora | Acrop | Hard coral |
| Acropora pharaonis | AcrPhar | Hard coral |
| Acropora tortuosa | AcTort | Hard coral |
| Alveopora tizardi | AlTiz | Hard coral |
| Anomastraea irregularis | AnIrr | Hard coral |
| Anomastraea | Anom | Hard coral |
| Blastomussa | Blast | Hard coral |
| Bleached Hard Coral | BLHard | Hard coral |
| Coscinaraea columna | CoCol | Hard coral |
| Coscinaraea | COSC | Hard coral |
| Coscinaraea monile | CosMon | Hard coral |
| Cycloseris curvata | CycCur | Hard coral |
| Cyphastrea microphthalma | CyMic | Hard coral |
| Cyphastrea chalcidicum | CYPch | Hard coral |
| Cyphastrea | Cypha | Hard coral |
| Cyphastrea serailia | CySer | Hard coral |
| Dead Acropora (branching) | DAcropBra | Hard coral |
| Dead Merulinidae | DMer | Hard coral |
| Dead Pocillopora | D_Pocillo | Hard coral |
| Echinophyllia aspera | EcAsp | Hard coral |
| Echinophyllia | ECHIN | Hard coral |
| Echinopora | Echinopora | Hard coral |
| Favia favus | FaFav | Hard coral |
| Favia pallida | FaPall | Hard coral |
| Favites | Fav | Hard coral |
| Favites abdita | FavAbd | Hard coral |
| Favites acuticollis | FavAcu | Hard coral |
| Favia (Indo-Pacific) | Favia | Hard coral |
| Favia speciosa | FaviaS | Hard coral |
| Favites pentagona | FavPent | Hard coral |
| Goniopora lobata | GoLob | Hard coral |
| Goniastrea | Goniastrea | Hard coral |
| Goniopora | Gonio | Hard coral |
| Unidentified Hard Coral | HCoral | Hard coral |
| Hydnophora pilosa | HyPil | Hard coral |
| Leptastrea | Lepta | Hard coral |
| Leptastrea transversa | LeTran | Hard coral |
| Leptastrea purpurea | LPurp | Hard coral |
| Madracis kirbyi | MaKirb | Hard coral |
| Montipora aequituberculata | MoAeq | Hard coral |
| Montipora informis | MoInfo | Hard coral |
| Montipora | Monti | Hard coral |
| Montipora spongiosa | MontiSpon | Hard coral |
| Pavona decussata | PaDec | Hard coral |
| Pavona cactus | Pav_cac | Hard coral |
| Pavona explanulata | PavExp | Hard coral |
| Pavona | Pavon | Hard coral |
| Pavona varians | PavVar | Hard coral |
| Pocillopora damicornis | PDAM | Hard coral |
| Platygyra | Plat | Hard coral |
| Platygyra crosslandi | PlCross | Hard coral |
| Platygyra Dead | PLD | Hard coral |
| Platygyra daedalea | PlDaed | Hard coral |
| Plesiastrea | Ples | Hard coral |
| Platygyra lamellina | PlLam | Hard coral |
| Platygyra sinensis | PlSinen | Hard coral |
| Plesiastrea versipora | PlVers | Hard coral |
| Porites lobata | P mass | Hard coral |
| Pocillopora | Pocill | Hard coral |
| Pocillopora verrucosa | PocVer | Hard coral |
| Porites harrisoni | PoHar | Hard coral |
| Porites lutea | PoLut | Hard coral |
| Porites nodifera | PoNod | Hard coral |
| Porites | Porit | Hard coral |
| Dead Porites massive | PorMass-D | Hard coral |
| Psammocora albopicta | PsAlb | Hard coral |
| Psammocora | Psam | Hard coral |
| Pseudosiderastrea | Pseudosid | Hard coral |
| Psammocora profundacella | PsProf | Hard coral |
| Psammocora stellata | PStell | Hard coral |
| Sclerophyllia maxima | ScMax | Hard coral |
| Siderastrea | SID | Hard coral |
| Siderastrea savignyana | SiSav | Hard coral |
| Stylophora pistillata | Spis | Hard coral |
| Stylophora | STY | Hard coral |
| Lobophyllia radians | SYMra | Hard coral |
| Tubastraea coccinea | TUBCOC | Hard coral |
| Turbinaria peltata | TuPel | Hard coral |
| Turbinaria (coral) | TURB | Hard coral |
| Turbinaria reniformis | TuRen | Hard coral |
| Anemone, unidentified | ANUN | Other Invertebrates |
| Ascidian, unidentified | ASCI | Other Invertebrates |
| Bryozoan | Brz | Other Invertebrates |
| Bivalve | Bvv | Other Invertebrates |
| Discosoma | DiscoS | Other Invertebrates |
| Diadema setosum | Dset | Other Invertebrates |
| Echinoderms: Sea Urchins: Pencil Urchins | E_E_RegPen | Other Invertebrates |
| Echinometra mathaei | EMath | Other Invertebrates |
| Holothuria | Holo | Other Invertebrates |
| Hydrozoa | HYDRO | Other Invertebrates |
| Other invertebrate | Other Inv | Other Invertebrates |
| Soft Bleached | SINV_BLC | Other Invertebrates |
| Soft Coral | Soft | Other Invertebrates |
| Sponge | Sponge | Other Invertebrates |
| Zoanthid | ZOAN | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Shell hash/Gravel | ShellHash | Soft Substrate |
| Silt/Clay | Silt | Soft Substrate |
| Dead coral | Dead | Hard Substrate |
| Rock_Pavement | RckPav | Hard Substrate |
| Dead coral with algae | DeadAlg | Other |
| All other | Other | Other |
| Broken coral rubble | Rubble | Other |
| Shadow | SHAD | Other |
| Transect hardware | Trans | Other |
| Unclear | Unc | Other |
| CCA (crustose coralline algae) | CCA | Algae |
| Algae (fleshy) | FALG | Algae |
| Macroalgae: Encrusting | MAEN | Algae |
| Turf algae | Turf | Algae |
| Dead seagrass | DeadSG | Seagrass |
| Halophila stipulacea | HalStipula | Seagrass |
| Halodule uninervis | HalUni | Seagrass |
| Halophila ovalis | HOV | Seagrass |