| Name | Short Code | Functional Group |
|---|---|---|
| Bleached Montipora | B_Monti | Hard coral |
| Bleached Pocillopora | B_Pocillo | Hard coral |
| Bleached Porites | B_Porit | Hard coral |
| Coscinaraea | Cosci | Hard coral |
| Cyphastrea | Cypha | Hard coral |
| Fungia | Fungia | Hard coral |
| Gardineroseris | Gardineros | Hard coral |
| Unidentified Hard Coral | HCoral | Hard coral |
| Leptastrea | Lepta | Hard coral |
| Leptoseris | Leptoseris | Hard coral |
| Montipora capitata algal overgrowth | Moncap AO | Hard coral |
| Montipora | Monti | Hard coral |
| Montipora capitata | MontiCap | Hard coral |
| Montipora flabellata | MontiFlab | Hard coral |
| Montipora patula | MontiPat | Hard coral |
| Pavona duerdeni | PavDue | Hard coral |
| Pavona varians | PavVar | Hard coral |
| Porites duerdeni | PDUER | Hard coral |
| Pocillopora algal overgrowth | PocAO | Hard coral |
| Pocillopora damicornis | PocDam | Hard coral |
| Pocillopora grandis (eydouxi) | PocGran | Hard coral |
| Pocillopora | Pocill | Hard coral |
| Pocillopora meandrina | PocMea | Hard coral |
| Porites algal overgrowth | PorAO | Hard coral |
| Porites compressa | PorComp | Hard coral |
| Porites compressa trematodiasis | Porcom TR | Hard coral |
| Porites evermanni | PorEverm | Hard coral |
| Porites evermanni trematodiasis | Poreve TR | Hard coral |
| Porites | Porites | Hard coral |
| Porites lobata | PorLob | Hard coral |
| Porites lobata trematodiasis | Porlob TR | Hard coral |
| Porites monticulosa | PorMont | Hard coral |
| Porites rus | PorRus | Hard coral |
| Sea cucumber | cucumber | Other Invertebrates |
| Sea Urchin | SU1 | Other Invertebrates |
| Zoanthids | Z | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Dead coral | D_coral | Hard Substrate |
| Framework coral | FRAM | Hard Substrate |
| Broken coral rubble | C-Rubble | Other |
| Poor photo/dark/unidentifiable | M-POOR | Other |
| Acanthophora spicifera | ASPIC | Algae |
| Avrainvillea amadelpha | AVAM | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dictyota | Algae |
| Gracilaria salicornia | GSAL | Algae |
| Halimeda spp. | Hal_spp | Algae |
| Lyngbya majuscula | lyn_maj | Algae |
| Padina spp. | Pad_spp | Algae |
| Plocamium spp. | PLOC | Algae |
| Spyridia filamentosa | SPYR | Algae |
| Turf algae | Turf | Algae |
| Unknown macroalgae | UnkMacroa | Algae |