| Name | Short Code | Functional Group |
|---|---|---|
| Acropora | 1ACR | Hard coral |
| Turf Algae-covered Acropora | 5TAACR | Hard coral |
| Acanthastrea | ACA | Hard coral |
| Acanthastrea Bleached | ACBB | Hard coral |
| Acanthastrea Dead | ACDD | Hard coral |
| Turf Algae-covered Favia | AFVA | Hard coral |
| Alveopora | ALV | Hard coral |
| Astreopora | AST | Hard coral |
| Bleached Acropora | B_Acro | Hard coral |
| Bleached Astreopora | B_Astreo | Hard coral |
| Barabattoia | BBT | Hard coral |
| Bleached Favia (Indo-Pacific) | BFavia | Hard coral |
| Bleached Goniopora | B_Goniop | Hard coral |
| Blastomussa | Blast | Hard coral |
| Bleached Isopora | Blisop | Hard coral |
| Bleached Montipora | B_Monti | Hard coral |
| Bleached Pocillopora | B_Pocillo | Hard coral |
| Bleached Porites | B_Porit | Hard coral |
| Branching Coral Rubble | BRR | Hard coral |
| Bleached Stylophora | B_Styloph | Hard coral |
| Conocyathus | CCY | Hard coral |
| Coscinaraea | COS | Hard coral |
| Cycloseris | Cyclo | Hard coral |
| Cyphastrea | CYP | Hard coral |
| Dead Acropora | Dead Acrop | Hard coral |
| Diseased Coral | DISCORAL | Hard coral |
| Dead Montipora | DMonti | Hard coral |
| Dead Pocillopora | D_Pocillo | Hard coral |
| Echinophyllia | ECH | Hard coral |
| Euphyllia | EUP | Hard coral |
| Flabellum | FLL | Hard coral |
| Favia | FVA | Hard coral |
| Favites | FVS | Hard coral |
| Goniastrea | GEA | Hard coral |
| Goniopora | GRA | Hard coral |
| Heterocyathus | HET | Hard coral |
| Heteropsammia | HMM | Hard coral |
| Homophyllia sp. | Homo | Hard coral |
| Hydnophora | HYD | Hard coral |
| Isopora | ISO | Hard coral |
| Leptastrea | LEA | Hard coral |
| Leptoria | LIA | Hard coral |
| Leptoseris | LIS | Hard coral |
| Lobophyllia | LOB | Hard coral |
| Micromussa | Mcmsa | Hard coral |
| Montastraea | Montastr | Hard coral |
| Montipora | MRA | Hard coral |
| Mycedium | MYC | Hard coral |
| Oulophyllia | OUL | Hard coral |
| Pavona | PAV | Hard coral |
| Platygyra | PLA | Hard coral |
| Plesiastrea | PLE | Hard coral |
| Pocillopora | POC | Hard coral |
| Porites | POR | Hard coral |
| Psammocora | PSA | Hard coral |
| Scolymia | SCO | Hard coral |
| Sediment-covered coral | SED-C | Hard coral |
| Seriatopora | SER | Hard coral |
| Stylophora | STY | Hard coral |
| Stylocoeniella | Styloc | Hard coral |
| Symphyllia | Symph | Hard coral |
| Turf Algae-covered Acanthastrea | TAACA | Hard coral |
| Turf Algae-covered Cyphastrea | TACYP | Hard coral |
| Turf Algae-covered Goniastrea | TAGEA | Hard coral |
| Turf Algae-covered Goniopora | TAGRA | Hard coral |
| Turf Algae-covered Pocillopora | TAPOC | Hard coral |
| Turf Algae-covered Psammocora | TAPSA | Hard coral |
| Turbinaria (coral) | TUR | Hard coral |
| Sea anemone | ANEM | Other Invertebrates |
| Bivalve | Bivalve | Other Invertebrates |
| Cladiella | Clad | Other Invertebrates |
| Corallimorpharia | Collimorph | Other Invertebrates |
| Sea cucumber | cucumber | Other Invertebrates |
| Dendronephthya | Dend | Other Invertebrates |
| Echinoderms | ECHINODERM | Other Invertebrates |
| Echinoderms: Sea stars | ESS | Other Invertebrates |
| Melithaea | Melith | Other Invertebrates |
| Other invertebrate | Other Inv | Other Invertebrates |
| Sarcophyton | Sarco | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Soft coral_bleached | SCBL | Other Invertebrates |
| Soft Bleached | SINV_BLC | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Tunicate | Tunicate | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Xenia | Xeni | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| sediment (fine) | sed_fine | Soft Substrate |
| Sediment | Sediment | Soft Substrate |
| Turf Algae-covered branching coral rubble | 4TABCR | Hard Substrate |
| Sediment-covered branching coral rubble | 7SEDRUB | Hard Substrate |
| Astreopora spp._recently dead | ASSP_RD | Hard Substrate |
| Goniastrea spp._recently dead | GOSP_RD | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Rock Rubble | RRub | Hard Substrate |
| Broken coral rubble | C-Rubble | Other |
| Encrusting algae-covered rock rubble | earr | Other |
| Shade | SHA | Other |
| Turf Algae-covered Soft Coral | TASC | Other |
| Encrusting Algae | 2EA | Algae |
| Turf algae | 3TURF | Algae |
| Macroalgae | 9MAL | Algae |
| Algae | Algae | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Unidentified Green Algae | GREEN | Algae |
| Turf on rubble | Turf_rubbl | Algae |