| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Acropora prolifera | AcrPro | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Diploria stigosa | DS | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FaviaFrag | Hard coral |
| Hcucullata | HCUC | Hard coral |
| Isophyllia sinuosa | IsophSin | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis auretenra | MadAure | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastrea cavernosa | MoCav | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycetophyllia aliciae | MycetAli | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites colonensis | PORCOL | Hard coral |
| Porites divaricata | PorDiv | Hard coral |
| Porites furcata | PorFurc | Hard coral |
| Porites porites | PorPor | Hard coral |
| Scolymia cubensis | SCOCUB | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Solenastrea hyades | SOL | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Millepora | Millepora | Other Invertebrates |
| Octocorallia | Octocoral | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Crustose, turf, bare | CTB | Hard Substrate |
| Cyanobacteria | CYANOB | Other |
| Other | O | Other |
| Off | Off | Other |
| Macroalgae | MAL | Algae |
| Peyssonnelia | Peysson | Algae |