| Name | Short Code | Functional Group |
|---|---|---|
| Montipora capitata algal overgrowth | Moncap AO | Hard coral |
| Montipora capitata | MontiCap | Hard coral |
| Pocillopora algal overgrowth | PocAO | Hard coral |
| Pocillopora meandrina | PocMea | Hard coral |
| Porites algal overgrowth | PorAO | Hard coral |
| Porites lobata | PorLob | Hard coral |
| Recruit | REC | Hard coral |
| Sand | Sand | Soft Substrate |
| Silt/Clay | Silt | Soft Substrate |
| Rock | Rock | Hard Substrate |
| Cover - Abundance of Cyanobacteria | C_A_Cyano | Other |
| Cyanobacteria | CYANOB | Other |
| Other | O | Other |
| Rubble | Rubble | Other |
| Unknown | Unk | Other |
| Cyanobacteria smothering dead coral | CYANO_DHC | Algae |
| Cyanobacteria smothering rubble | CYANO_RB | Algae |
| Macroalgae | MAL | Algae |