| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Acropora prolifera | AcrPro | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia grahamae | AgGra | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Bleached Acropora | BL_Acro | Hard coral |
| Bleached Agaricia | BL_Aga | Hard coral |
| Bleached Colpophyllia natans | BL_CoNat | Hard coral |
| Bleached Dendrogyra | BL_Den | Hard coral |
| Bleached Dichocoenia stokesi | BL_DicStok | Hard coral |
| Bleached Pseudodiploria clivosa | BL_DipCliv | Hard coral |
| Bleached Pseudodiploria strigosa | BL_DipStr | Hard coral |
| Bleached Diploria labyrinthiformes | BL_DLab | Hard coral |
| Bleached Eusmilia fastigiata | BL_EusFas | Hard coral |
| Bleached Favia sp. | BL_Favia | Hard coral |
| Bleached Isophyllia | BL_Iso | Hard coral |
| Bleached Madracis | BL_Mad | Hard coral |
| Bleached Montastraea cavernosa | BL_MCav | Hard coral |
| Bleached Meandrina | BL_Mean | Hard coral |
| Bleached Orbicella annularis | BL_OrbAnn | Hard coral |
| Bleached Orbicella faveolata | BL_OrbFav | Hard coral |
| Bleached Orbicella franksi | BL_OrbFran | Hard coral |
| Bleached Porites astreoides | BL_PAst | Hard coral |
| Bleached Porites porites | BL_PorPor | Hard coral |
| Bleached Siderastrea radians | BL_SidRad | Hard coral |
| Bleached Siderastrea siderea | BL_SidSid | Hard coral |
| Stephanocoenia intersepta - Bleached | BL_StInt | Hard coral |
| Bleached Tubastrea | BL_Tuba | Hard coral |
| Colpophyllia natans | ColNat | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia stokesi | DicStok | Hard coral |
| Diploria clivosa | DipCli | Hard coral |
| Diploria stigosa | DipStr | Hard coral |
| Diploria labyrinthiformis | DLab | Hard coral |
| Eusmilia fastigiata | EusFas | Hard coral |
| Favia fragum | FavFrag | Hard coral |
| Helioseris cucullata | HeCuc | Hard coral |
| Isophyllia | Isoph | Hard coral |
| Madracis carmabi | MadCarm | Hard coral |
| Madracis decactis | MadDec | Hard coral |
| Madracis mirabilis | MadMir | Hard coral |
| Madracis pharensis | MadPhar | Hard coral |
| Madracis senaria | MadSen | Hard coral |
| Manicina areolata | ManAr | Hard coral |
| Montastraea cavernosa | MCav | Hard coral |
| Meandrina meandrites | MeanMean | Hard coral |
| Mussa angulosa | MussAng | Hard coral |
| Mycetophyllia | Myceto | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites divaricata | PorDiv | Hard coral |
| Porites porites | PorPor | Hard coral |
| Scolymia | Scol | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Solenastrea | Solen | Hard coral |
| Stephanocoenia intersepta | StInt | Hard coral |
| Tubastrea | Tubas | Hard coral |
| Antipatharia | Antipa | Other Invertebrates |
| Ascidian | Ascid | Other Invertebrates |
| Millepora bleached | BL_Mille | Other Invertebrates |
| Briareum | Briar | Other Invertebrates |
| Erythropodium caribaeorum | Eryth | Other Invertebrates |
| Gorgoniidae | Gorgo | Other Invertebrates |
| Hydroid | Hydroid | Other Invertebrates |
| Other invertebrate | Invert | Other Invertebrates |
| Millepora | Millepo | Other Invertebrates |
| Palythoa caribaeorum | PalyCar | Other Invertebrates |
| Sponge | Sponge | Other Invertebrates |
| Trididemnum spp. | Tridide | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Pavement | Pavement | Hard Substrate |
| Cyanobacteria | Cyano | Other |
| Rubble | Rubble | Other |
| Sand and Gravel - Cyanobacteria | SandCya | Other |
| Turfy Biotic Matrix | TurfMatrix | Other |
| Calcified Macroalgae | CalMacro | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dict | Algae |
| Fleshy macroalgae | FleMacro | Algae |
| Halimeda | Halim | Algae |
| Lobophora | Lobo | Algae |
| Padina | Padi | Algae |
| Peyssonnelia | Peyss | Algae |
| Sargassum | Sarg | Algae |
| Turf algae | Turf | Algae |
| Turf overgrowing recently dead coral | TurfCoral | Algae |
| Seagrass | Seagrass | Seagrass |