| Name | Short Code | Functional Group |
|---|---|---|
| Bleached Pavona | B_Pavona | Hard coral |
| Bleached Pocillopora | B_Pocillo | Hard coral |
| Bleached Porites | B_Porit | Hard coral |
| Dead Pocillopora | D_Pocillo | Hard coral |
| Pavona frondifera | frondifera | Hard coral |
| Leptoseris papyracea | papyracea | Hard coral |
| Pavona chiriquiensis | PavChi | Hard coral |
| Pavona clavus | PavClav | Hard coral |
| Pavona duerdeni | PavDue | Hard coral |
| Pavona | Pavona | Hard coral |
| Pavona varians | PavVar | Hard coral |
| Pocillopora damicornis | PocDam | Hard coral |
| Pocillopora elegans | PocEle | Hard coral |
| Pocillopora | Pocill | Hard coral |
| Pocillopora meandrina | PocMea | Hard coral |
| Pocillopora verrucosa | PocVer | Hard coral |
| Porites Dead | POD | Hard coral |
| Porites evermanni | PorEverm | Hard coral |
| Porites | Porites | Hard coral |
| Porites lobata | PorLob | Hard coral |
| Porites panamensis | PorPan | Hard coral |
| Psammocora_bleached | PSAMM_BL | Hard coral |
| Psammocora | Psammo | Hard coral |
| Psammocora stellata | PsamStell | Hard coral |
| Unknown Coral | Un coral | Hard coral |
| Acanthaster planci | ACPL | Other Invertebrates |
| Carijoa riisei | CARI | Other Invertebrates |
| Muricea fruticosa | Murfru | Other Invertebrates |
| Unknown Sponge/Tunicate | SpTun | Other Invertebrates |
| Unknown Bryozoan | UnkBry | Other Invertebrates |
| Unknown Hydroid | UnkHyd | Other Invertebrates |
| Unknown Invertebrate | Unkinvert | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Sediment | Sediment | Soft Substrate |
| Rock | Rock | Hard Substrate |
| Cyanobacteria_filamentous | cyafil | Other |
| Rubble | Rubble | Other |
| Unknown | Unk | Other |
| Caulerpa | Caulerpa | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dictyota | Algae |
| Halimeda | Halimeda | Algae |
| Padina | Padina | Algae |
| Turf algae | Turf | Algae |
| Unknown macroalgae | UnkMacroa | Algae |