| Name | Short Code | Functional Group |
|---|---|---|
| Cyphastrea ocellina | COcell | Hard coral |
| Fungia | Fung | Hard coral |
| Leptastrea purpurea | LPurp | Hard coral |
| Montipora capitata | MCAP | Hard coral |
| Montipora flabellata | MFLAB | Hard coral |
| Montipora | Monti | Hard coral |
| Montipora patula | MPATU | Hard coral |
| Porites compressa | PCOM | Hard coral |
| Pocillopora damicornis | PDAM | Hard coral |
| Pocillopora grandis (eydouxi) | PEYDO | Hard coral |
| Porites lobata 1 | Plob | Hard coral |
| Pocillopora meandrina | PMEAN | Hard coral |
| Porites | Porit | Hard coral |
| Psammocora stellata | PStell | Hard coral |
| Pavona varians | PVAR | Hard coral |
| Annelida, unidentified | ANNE | Other Invertebrates |
| Aiptasia pulchella | APul | Other Invertebrates |
| Echinometra mathaei | EMath | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Molluscs: Bivalves | MOBI | Other Invertebrates |
| Molluscs: Chitons | MOCH | Other Invertebrates |
| Molluscs: Gastropods | MOG | Other Invertebrates |
| Sabellidae | Sab | Other Invertebrates |
| Sea cucumber | SECO | Other Invertebrates |
| Sponge, unidentified | SPUN | Other Invertebrates |
| Tripneustes gratilla | Tgrat | Other Invertebrates |
| Vermetidae | Verme | Other Invertebrates |
| Zoanthus | ZOA | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Sediment | Sediment | Soft Substrate |
| Dead coral | Dead | Hard Substrate |
| Rock Rubble | RockRub | Hard Substrate |
| Dead coral with algae | DeadAlg | Other |
| Off | Off | Other |
| Unclear | Unc | Other |
| Unidentified algae | ALGA | Algae |
| Acanthophora spicifera | ASPIC | Algae |
| Caulerpa | Caul | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyosphaeria cavernosa | DCav | Algae |
| Dictyosphaeria versluysii | DVers | Algae |
| Gracilaria salicornia | GSAL | Algae |
| Kappaphycus sp. | KAPPA | Algae |
| Laurencia spp. | Limu | Algae |
| Padina | Pad | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf | Algae |
| Turf and sand | Turfsa | Algae |