| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | Acanth | Hard coral |
| Acropora (arborescent) | Acr_arb | Hard coral |
| Acropora (arborescent table) | Acr_arbTab | Hard coral |
| Acropora spp._staghorn | ACSTA | Hard coral |
| Astreopora | Astreo | Hard coral |
| Bleached Hard Coral | B_HC | Hard coral |
| Caulastrea | Caula | Hard coral |
| Hard Coral (branching) | C_branch | Hard coral |
| Coscinaraea | Cosci | Hard coral |
| Ctenactis | Ctena | Hard coral |
| Cyphastrea | Cypha | Hard coral |
| Acropora cytheria | cytheria | Hard coral |
| Diploastrea | Diplo | Hard coral |
| Echinophyllia | Echinophyl | Hard coral |
| Echinopora | Echinopora | Hard coral |
| Euphyllia | Euphyllia | Hard coral |
| Favia | fav | Hard coral |
| Favites | Favites | Hard coral |
| Fungia | Fungia | Hard coral |
| Galaxea | Galaxea | Hard coral |
| Gardineroseris | Gardineros | Hard coral |
| Goniastrea | Goniastrea | Hard coral |
| Goniopora | Goniopora | Hard coral |
| Hard coral | HC | Hard coral |
| Hard Coral (encrusting) | HC_encr | Hard coral |
| Hard Coral Massive | HCM | Hard coral |
| Herpolitha | Herpo | Hard coral |
| Hydnophora | Hydno | Hard coral |
| Isopora | Isopora | Hard coral |
| Leptastrea | Lepta | Hard coral |
| Leptoria | Leptoria | Hard coral |
| Leptoseris | Leptoseris | Hard coral |
| Lobophyllia | Lobophyl | Hard coral |
| Merulina | Merulina | Hard coral |
| Montastrea cavernosa | MoCav | Hard coral |
| Montipora | Monti | Hard coral |
| Mycedium | Myc | Hard coral |
| Oulophyllia | Ouloph | Hard coral |
| Oxypora | Oxyp | Hard coral |
| Pachyseris | Pachyseris | Hard coral |
| Pavona decussata_divaricata_frondifera | Pav_d_d_f | Hard coral |
| Pavona | Pavona | Hard coral |
| Pectinia | PEC | Hard coral |
| Physogyra | Phys | Hard coral |
| Platygyra | Platy | Hard coral |
| CRED-Plerogyra spp | *PLER | Hard coral |
| Plerogyra | Plero | Hard coral |
| Plesiastrea | Plesiastr | Hard coral |
| Pocillopora | Pocill | Hard coral |
| Porites (branching) | Por_branch | Hard coral |
| Porites compressa | PorComp | Hard coral |
| Porites cylindrica | PorCyl | Hard coral |
| Porites | Porites | Hard coral |
| Porites (massive) | Por_mass | Hard coral |
| Porites rus | PorRus | Hard coral |
| Psammocora | Psammo | Hard coral |
| Sandalolitha | SANDALTH | Hard coral |
| Scapophyllia | Scapophyll | Hard coral |
| Seriatopora | Seriatop | Hard coral |
| Stylocoeniella | Styloc | Hard coral |
| Stylophora | Styloph | Hard coral |
| Symphyllia | Symph | Hard coral |
| sea anenome | aneno | Other Invertebrates |
| Ascidian | ASCD | Other Invertebrates |
| Discosoma | DiscoS | Other Invertebrates |
| Erect gorgonians | ERGR | Other Invertebrates |
| Heliopora | Heliop | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Other invertebrate | Other Inv | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Sponges | Spgs | Other Invertebrates |
| Zoanthids | Z | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Dead coral | D_coral | Hard Substrate |
| Dead staghorn Acropora | DEST | Hard Substrate |
| Brown Chrysophyte | chrys_brn | Other |
| Broken coral rubble | C-Rubble | Other |
| Cyanobacteria | CYANOB | Other |
| Schizothrix | Cyan red | Other |
| Shadow | SHAD | Other |
| CREP-T1 Tape/Wand | *TW | Other |
| Amphiroa sp. | Amphi | Algae |
| Asparagopsis | Asparago | Algae |
| Bluegreen algae | BGA | Algae |
| Boodlea | Boodlea | Algae |
| Branching Coralline Algae | BranchCA | Algae |
| Bryopsis spp. | BrSpp | Algae |
| Caulerpa | Caulerpa | Algae |
| CCA: On dead coral | *CCADHC | Algae |
| Chlorodesmis sp. | Chlor | Algae |
| Dictyosphaeria | Dictyosph | Algae |
| Dictyota | Dictyota | Algae |
| Galaxaura | Galaxaura | Algae |
| Gelidiopsis | GLPS | Algae |
| Halimeda | Halimeda | Algae |
| Halymenia sp. | HALY | Algae |
| Hypnea | Hyp | Algae |
| Jania | Jania | Algae |
| Liagora | LIA | Algae |
| Lobophora | Lobophora | Algae |
| Macroalgae | MAL | Algae |
| Mastophora_articulated_calcareous | masarc | Algae |
| Microdictyon | Microdicty | Algae |
| Neomeris | Neomeris | Algae |
| Padina | Padina | Algae |
| Peyssonnelia | Peysson | Algae |
| Ralfsia expansa | Rae | Algae |
| Rosenvingea sp. | RSVG | Algae |
| Sargassum | Sargassum | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf | Algae |
| Tydemania spp. | Tyd | Algae |
| Ulva | Ulva | Algae |
| Valonia spp. | Valspp | Algae |