| Name | Short Code | Functional Group |
|---|---|---|
| Acropora | ACRO | Hard coral |
| Acanthastrea | ACSP | Hard coral |
| Acropora humilis | AHUM | Hard coral |
| Acropora muricata | AMUR | Hard coral |
| Acropora cf. pulchra | APUL | Hard coral |
| Astrea | ATSP | Hard coral |
| Other hard coral | CORA | Hard coral |
| Cyphastrea | CSPE | Hard coral |
| Ctenactis | CTSP | Hard coral |
| Cycloseris | CYSP | Hard coral |
| Diploastrea heliopora | DPHE | Hard coral |
| Dipsastraea | DPSP | Hard coral |
| Favites | FAVS | Hard coral |
| Fungia | FUSP | Hard coral |
| Galaxea fascicularis | GFAS | Hard coral |
| Goniastrea | GNSP | Hard coral |
| Goniopora | GPSP | Hard coral |
| Goniastrea edwardsi_retiformis | GRET | Hard coral |
| Goniastrea stelligera | GSTE | Hard coral |
| Hard Coral (encrusting) | HC_encr | Hard coral |
| Herpolitha | HESP | Hard coral |
| Hydnophora microconos | HMIC | Hard coral |
| Leptastrea | LESP | Hard coral |
| Leptoria | LPHR | Hard coral |
| Leptastrea purpurea | LPUR | Hard coral |
| Montipora | MONS | Hard coral |
| Montipora verrucosa | MVER | Hard coral |
| Porites annae | PANN | Hard coral |
| Pavona cactus | PCAC | Hard coral |
| Porites cylindrica | PCYL | Hard coral |
| Platygyra daedalea | PDAE | Hard coral |
| Pocillopora damicornis | PDAM | Hard coral |
| Pavona decussata | PDEC | Hard coral |
| Pavona decussata_divaricata_frondifera | PDIV | Hard coral |
| Plesiastrea versipora | PLVE | Hard coral |
| Porites (massive) | PMAS | Hard coral |
| Pocillopora | POSP | Hard coral |
| Platygyra pini | PPIN | Hard coral |
| Porites rus | PRUS | Hard coral |
| Psammocora contigua | PSCO | Hard coral |
| Psammocora profundacella | PSPR | Hard coral |
| Pavona varians | PVAR | Hard coral |
| Pavona venosa | PVEN | Hard coral |
| Pavona | PVSP | Hard coral |
| Heliopora coerulea | HCOE | Other Invertebrates |
| Other invertebrate | INVE | Other Invertebrates |
| Sinularia | SINU | Other Invertebrates |
| Other Soft Corals | SOFT | Other Invertebrates |
| Sponge | SPNG | Other Invertebrates |
| Dead coral | DEAD | Hard Substrate |
| Cyanobacteria | CYAN | Other |
| Unknown | NOID | Other |
| Other | OTHR | Other |
| Sand / Rubble | SARU | Other |
| Transect Tape | TAPE | Other |
| Amphiroa sp. | AMPH | Algae |
| Actinotrichia sp. | ATIN | Algae |
| Boodlea | BOOD | Algae |
| Red algae - branching | BRCA | Algae |
| Caulerpa racemosa | CARA | Algae |
| Caulerpa spp. | CAUL | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Chrysocystis fragilis | CHFR | Algae |
| Dictyota | DICT | Algae |
| Dictyosphaeria | DIPH | Algae |
| Halimeda | HALI | Algae |
| Macroalgae | MALG | Algae |
| Neomeris | NESP | Algae |
| Padina | PADN | Algae |
| Sargassum | SARG | Algae |
| Turbinaria (algae) | TURB | Algae |
| Valonia spp. | VALO | Algae |
| Seagrass (Enhalus acoroides) | EACO | Seagrass |
| Halophila minor | HMIN | Seagrass |
| Halodule uninervis | HUNI | Seagrass |