| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | Acanth | Hard coral |
| Acanthastrea Dead | ACDD | Hard coral |
| Acropora (branching) | Acr_bra | Hard coral |
| Acropora | Acropora | Hard coral |
| Acropora (tabulate) | Acr_tab | Hard coral |
| Astreopora | Astreo | Hard coral |
| Bleached Acropora | B_Acro | Hard coral |
| Bleached Acropora branching | BAcroBr | Hard coral |
| Bleached Acropora tabulate | BAT | Hard coral |
| Bleached Cyphastrea | B_Cyph | Hard coral |
| Bleached Goniopora | B_Goniop | Hard coral |
| Bleached Pocillopora | B_Pocillo | Hard coral |
| Hard Coral (branching) | C_branch | Hard coral |
| Cyphastrea | Cypha | Hard coral |
| Dead Acropora (branching) | DAcropBra | Hard coral |
| Dead Acropora | Dead Acrop | Hard coral |
| Dead Favites | DFav | Hard coral |
| Dipsastraea | Dipsa | Hard coral |
| Dead Massive Coral | DMS | Hard coral |
| Favites | Favites | Hard coral |
| Fungia | Fungia | Hard coral |
| Goniastrea | Goniastrea | Hard coral |
| Goniopora | Goniopora | Hard coral |
| Hard Coral (encrusting) | HC_encr | Hard coral |
| Hard Coral (massive) | HC_massive | Hard coral |
| Isopora | Isopora | Hard coral |
| Lobophyllia | Lobophyl | Hard coral |
| Pocillopora | Pocill | Hard coral |
| Seriatopora | Seriatop | Hard coral |
| Stylophora | Styloph | Hard coral |
| Turf Algae-covered Cyphastrea | TACYP | Hard coral |
| Turf Algae-covered Goniastrea | TAGEA | Hard coral |
| Turf Algae-covered Goniopora | TAGRA | Hard coral |
| Cladiella | Clad | Other Invertebrates |
| Clam, unidentified | Clm | Other Invertebrates |
| Corallimorpharia | Collimorph | Other Invertebrates |
| Echinoderms | ECHINODERM | Other Invertebrates |
| Molluscs: Bivalves | MOBI | Other Invertebrates |
| Octocorallia | Octocoral | Other Invertebrates |
| Porifera | Prfa | Other Invertebrates |
| Sarcophyton | Sarco | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Astreopora spp._recently dead | ASSP_RD | Hard Substrate |
| Cyphastrea spp. recently dead | CYSP_RD | Hard Substrate |
| Dead coral | D_coral | Hard Substrate |
| Dead encrusting coral | D_Encrus | Hard Substrate |
| Turf algae on Dead Acropora (tabulate) | TURDAcrTab | Hard Substrate |
| Dead Dipsastraea with Turf Algae | TURDDipsa | Hard Substrate |
| Dead coral with turf algae | TURDHC | Hard Substrate |
| Turf Algae on Recently Dead Lobophyllia | TURDLobo | Hard Substrate |
| Wood | Wood | Hard Substrate |
| Rubble | Rubble | Other |
| Transect hardware | Transect | Other |
| CCA (crustose coralline algae) | CCA | Algae |
| CCA on dead branching | CCA_DB | Algae |
| CCA growing on rubble | CCA_Rub | Algae |
| Dead Pocillopora with sedimented turf | Dpocsed | Algae |
| EAM: with sand | EAMsand | Algae |
| Macroalgae | MAL | Algae |
| Pink branching CCA on dead tabular coral | /pbCCAdtC | Algae |
| Turf on dead branching | TBRA | Algae |
| Turf algae | Turf | Algae |
| Turf on rubble | Turf_rubbl | Algae |
| Turf and sand | Turf_sand | Algae |