| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | ACER | Hard coral |
| Agaricia agaricites | AGRSP | Hard coral |
| Colpophyllia natans | CNAT | Hard coral |
| Diploria labyrinthiformis | DLAB | Hard coral |
| Dichocoenia stokesi | DSTO | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Isophyllia | ISOP | Hard coral |
| Mussa angulosa | MANG | Hard coral |
| Montastrea cavernosa | MCAV | Hard coral |
| Meandrina meandrites | MMEA | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Oculina diffusa | ODIF | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Pseudodiploria clivosa | PCLI | Hard coral |
| Porites divaricata | PDIV | Hard coral |
| Porites porites | PPOR | Hard coral |
| Pseudodiploria strigosa | PSTR | Hard coral |
| Solenastrea | SOLE | Hard coral |
| Siderastrea radians | SRAD | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Stephanocoenia spp. | STEP | Hard coral |
| Amphimedon compressa | ACOM | Other Invertebrates |
| Agelas | AGEL | Other Invertebrates |
| Aplysina spp. | APLYSP | Other Invertebrates |
| Callyspongia spp. | CALSP | Other Invertebrates |
| Cliona delitrix | CDEL | Other Invertebrates |
| Cliona varians | CVAR | Other Invertebrates |
| Desmapsamma anchorata | DANC | Other Invertebrates |
| Encrusting gorgonian | ECAR | Other Invertebrates |
| Eunicea spp. | EUNSP | Other Invertebrates |
| Gorgonia ventalina | GVEN | Other Invertebrates |
| Iotrochota | IBIR | Other Invertebrates |
| Ircinia strobilina | ISTR | Other Invertebrates |
| Millepora | MALC | Other Invertebrates |
| Pterogorgia | PANC | Other Invertebrates |
| Pseudopterogorgia sp | PSEUSP | Other Invertebrates |
| Spheciospongia vesparium | SVES | Other Invertebrates |
| Xestospongia | XMUT | Other Invertebrates |
| Palythoa | ZOAN | Other Invertebrates |
| Sand | SAND | Soft Substrate |
| Bare/Turf | TURF | Hard Substrate |
| Other | OTHER | Other |
| Rubble | RUBBLE | Other |
| Amphiroa sp. | AMPHSP | Algae |
| Caulerpa | CAULSP | Algae |
| Blue-Green Algae | CYAN | Algae |
| Dictyota | DICTSP | Algae |
| Halimeda | HALISP | Algae |
| Lobophora | LOBOSP | Algae |
| Porolithon | PPAC | Algae |
| Sargassum | SNAT | Algae |
| Wrangelia | WPEN | Algae |
| Thalassia | TTES | Seagrass |