| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | ACRC | Hard coral |
| Acropora palmata | ACRP | Hard coral |
| Agaricia agaricites | AGAAGA | Hard coral |
| Agaricia lamarcki | AGALAM | Hard coral |
| Agaricia humilis | AH | Hard coral |
| Bleached Orbicella | BORB | Hard coral |
| Dichocoenia stokesi | CIST | Hard coral |
| Colpophyllia natans | CON | Hard coral |
| Dendrogyra cylindrus | DEC | Hard coral |
| Diploria strigosa | DIS | Hard coral |
| Diploria labyrinthiformis | DL | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FAF | Hard coral |
| Hcucullata | HCUC | Hard coral |
| Isophyllia sinuosa | ISOSIN | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis decactis | MAD | Hard coral |
| Madracis mirabilis | MAMI | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Millepora spp. | Mil_spp | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycetophyllia aliciae | MYCALI | Hard coral |
| Mycetophyllia lamarckana | MYL | Hard coral |
| Orbicella annularis | ORBANN | Hard coral |
| Orbicella faveolata | ORBFAV | Hard coral |
| Orbicella franksi | ORBFRA | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Porites divaricata | PD | Hard coral |
| Porites furcata | PF | Hard coral |
| Porites porites | POP | Hard coral |
| Porites colonensis | PORCOL | Hard coral |
| Scolymia cubensis | SCOCUB | Hard coral |
| Siderastrea radians | SIDRAD | Hard coral |
| Solenastrea hyades | SOL | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Stephanocoenia intersepta | STEINT | Hard coral |
| Sand | Sand | Soft Substrate |
| Crustose, turf, bare | CTB | Hard Substrate |
| Cyanobacteria films | CYAN | Other |
| All other | Other | Other |
| Macroalgae | Macro | Algae |