| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia fragilis | AGAFRA | Hard coral |
| Dichocoenia stokesi | CIST | Hard coral |
| Diploria labyrinthiformis | DL | Hard coral |
| Favia fragum | FAF | Hard coral |
| Isophyllia sinuosa | ISOSIN | Hard coral |
| Madracis auretenra | MADAUR | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Madracis decacitis | MD | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Oculina diffusa | OCD | Hard coral |
| Orbicella franksi | ORBFRA | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Porites porites | POP | Hard coral |
| Pseudodiploria strigosa | PSESTR | Hard coral |
| Scolymia cubensis | SCOCUB | Hard coral |
| Siderastrea radians | SIDRAD | Hard coral |
| Stephanocoenia intersepta | STEINT | Hard coral |
| Encrusting sponge | ENSP | Other Invertebrates |
| Gorgoniidae | GORGO | Other Invertebrates |
| Hermit crab | Her | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Sponge | Sponge | Other Invertebrates |
| Worms: Polychaetes: Tube worms | WPTW | Other Invertebrates |
| Bare Substrate | Bare-Subst | Hard Substrate |
| Bare/Turf | Bar/Trf | Hard Substrate |
| Deep Turf | DpTrf | Other |
| Framer | FRM | Other |
| Shadow | SHAD | Other |
| CCA (crustose coralline algae) | CCA | Algae |
| Lobophora | Lobph | Algae |
| Macroalgae | Macro | Algae |
| Turf algae | Turf | Algae |