| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | ACER | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Agaricia spp. | AG | Hard coral |
| Diploria spp | Diploria | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Meandrina | MEAN | Hard coral |
| Mycetophyllia | MYCE | Hard coral |
| OFAV | OFAV | Hard coral |
| Orbicella | Orbicella | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Unknown Coral | Un coral | Hard coral |
| Diadema antillarum | Diad | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Molluscs | MO | Other Invertebrates |
| Sabellidae | Sab | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sponges: Massive forms: Barrels | SMB | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Zooanthid | ZOO | Other Invertebrates |
| Sediment | SED | Soft Substrate |
| gear | gears | Other |
| Rubble | Rubble | Other |
| Shadow | SHAD | Other |
| Unknown, other | UOth | Other |
| Benthic Cyanobacterial Mat | BCM | Algae |
| Caulerpa | CAL | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | DICT | Algae |
| Halimeda | HALI | Algae |
| Lobophora | Lobophora | Algae |
| Macroalgae: Articulated calcareous: red | MAACR | Algae |
| Macroalgae: Filamentous / filiform : red | MAFR | Algae |
| Macroalgae | MAL | Algae |
| Padina | Padina | Algae |
| Turf algae | TA | Algae |
| Udotea spp. | UDOT | Algae |
| Valonia spp. | Valspp | Algae |