| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | ACAN | Hard coral |
| Acropora (branching) | ACB | Hard coral |
| Acropora (corymbose) | ACC | Hard coral |
| Acropora (digitate) | ACD | Hard coral |
| Acropora (hispidose) | ACH | Hard coral |
| Acropora robusta group | ACR | Hard coral |
| Attached Fungiids | AF | Hard coral |
| Astreopora | AST | Hard coral |
| Bubble Coral | BUB | Hard coral |
| Caulastraea | CAU | Hard coral |
| Hard Coral (branching) | CB | Hard coral |
| Hard Coral (encrusting) | CE | Hard coral |
| Hard Coral (foliose) | CF | Hard coral |
| Hard Coral (massive) | CM | Hard coral |
| Solitary free living disk circular 10-30cm | CMR | Hard coral |
| Coeloseris | COE | Hard coral |
| Coscinaraea | COS | Hard coral |
| Cyphastrea | CYP | Hard coral |
| Diploastrea | DIP | Hard coral |
| Echinopora | ECHI | Hard coral |
| Echinophyllia | ECHY | Hard coral |
| Euphyllia | EUP | Hard coral |
| Favia | FAV | Hard coral |
| Hard Coral (free-living) | FOT | Hard coral |
| Favites | FVI | Hard coral |
| Galaxea | GAL | Hard coral |
| Goniastrea | GONIA | Hard coral |
| Goniopora | GONIO | Hard coral |
| Hydnophora | HYD | Hard coral |
| Isopora | ISO | Hard coral |
| Leptoria | LEPA | Hard coral |
| Leptoseris | LEPS | Hard coral |
| Lobophyllia | LOB | Hard coral |
| Merulina | MER | Hard coral |
| Millepora sp. | MILL | Hard coral |
| MONTASTREA TAU | MON | Hard coral |
| Montipora (branching) | MONTB | Hard coral |
| Montipora (encrusting) | MONTE | Hard coral |
| Montipora (foliose) | MONTF | Hard coral |
| Mycedium | MYC | Hard coral |
| Oulastrea | OULA | Hard coral |
| Oulophyllia | OULO | Hard coral |
| Oxypora | OXY | Hard coral |
| Pachyseris_encrusting | PACE | Hard coral |
| Pachyseris_foliose | PACF | Hard coral |
| Pavona | PAV | Hard coral |
| Pectinia | PEC | Hard coral |
| Platygyra | PLAT | Hard coral |
| Pocillopora | POC | Hard coral |
| Porites (branching) | PORB | Hard coral |
| Porites_encrusting | PORE | Hard coral |
| Porites (massive) | PORM | Hard coral |
| Seriatopora | SER | Hard coral |
| Stylophora | STY | Hard coral |
| Symphyllia | SYM | Hard coral |
| Turbinaria (coral) | TURB | Hard coral |
| Acroporidae | ZACRF | Hard coral |
| Agariciidae | ZAGARF | Hard coral |
| Fungiidae | ZCMRF | Hard coral |
| Euphyllidae | ZEUPF | Hard coral |
| Faviidae | ZFAVF | Hard coral |
| Mussidae | ZMUSF | Hard coral |
| Non-Scleractinian Hard Corals | ZNSC | Hard coral |
| Other hard coral | ZOC | Hard coral |
| Pocilloporidae | ZPOCF | Hard coral |
| Corallimorpharia | COR | Other Invertebrates |
| Acanthaster sp | COTS | Other Invertebrates |
| Diadema sp | DIA | Other Invertebrates |
| Any gorgonian | GORG | Other Invertebrates |
| Heliopora | HEL | Other Invertebrates |
| Isis | ISIS | Other Invertebrates |
| Other Invertebrates | OT | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Tubipora | TUBI | Other Invertebrates |
| Zoanthid | ZO | Other Invertebrates |
| Gravel | GRV | Soft Substrate |
| Sand | S | Soft Substrate |
| Silt/Clay | SI | Soft Substrate |
| Dead coral | DC | Hard Substrate |
| Dead coral with turf algae | DCA | Hard Substrate |
| Rock | RCK | Hard Substrate |
| Disease | DIS | Other |
| Rubble | R | Other |
| CREP-T1 Tape/Wand | TWB | Other |
| Dendrophylliidae | ZDENF | Other |
| Algal Assemblage | AA | Algae |
| Ulva intestinalis | ACT | Algae |
| CCA (crustose coralline algae) | CA | Algae |
| Codium | COD | Algae |
| Halimeda | HA | Algae |
| Kappaphycus sp. | KAPP | Algae |
| Macroalgae | MA | Algae |
| Sargassum | SARG | Algae |
| Seagrass | SG | Seagrass |