| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | Acan | Hard coral |
| Acropora (arborescent) | AcArb | Hard coral |
| Acropora (corymbose) | AcCor | Hard coral |
| Acropora (digitate) | AcDig | Hard coral |
| Acropora florida | ACflo | Hard coral |
| Acropora formosa | ACfor | Hard coral |
| Acropora hyacinthus | AChia | Hard coral |
| Acropora (hispidose) | AcHisp | Hard coral |
| Acropora humilis | AChum | Hard coral |
| Acropora millepora | ACmill | Hard coral |
| Acropora (plating) | AcPlat | Hard coral |
| Acropora (branching) | Acro-Br | Hard coral |
| Acropora | Acrop | Hard coral |
| Acropora (submassive) | AcroSub | Hard coral |
| Acropora (tabulate) | AcroTab | Hard coral |
| Astreopora (encrusting) | AstEnc | Hard coral |
| Astreopora (massive) | AstMas | Hard coral |
| Caulastrea | Caula | Hard coral |
| Coral | Coral | Hard coral |
| Coscinaraea | COSC | Hard coral |
| Ctenactis | Cten | Hard coral |
| Cyphastrea | Cypha | Hard coral |
| Diploastrea | Dipl | Hard coral |
| Echinopora | Ech | Hard coral |
| Echinophyllia | ECHIN | Hard coral |
| Euphyllia | Euph | Hard coral |
| Favites | Fav | Hard coral |
| Favia (Indo-Pacific) | Favia | Hard coral |
| Fungia | Fung | Hard coral |
| Galaxea | GAL | Hard coral |
| Gardineroseris | Gardin | Hard coral |
| Goniastrea | Gon | Hard coral |
| Goniopora | Gonio | Hard coral |
| Halomitra | Hal | Hard coral |
| Herpolitha | Herpo | Hard coral |
| Hydnophora | HYDNO | Hard coral |
| Isopora | Isop | Hard coral |
| Leptoria | Lept | Hard coral |
| Leptastrea | Lepta | Hard coral |
| Leptoseris | Lepto | Hard coral |
| Lobophyllia | Lobo | Hard coral |
| Merulina | MER | Hard coral |
| Montastraea | Monta | Hard coral |
| Montipora | Monti | Hard coral |
| Mycedium | Myc | Hard coral |
| Oxypora | Oxyp | Hard coral |
| Pachyseris | Pachy | Hard coral |
| Pavona | Pavon | Hard coral |
| Pectinia | PEC | Hard coral |
| Physogyra | Phys | Hard coral |
| Platygyra | Plat | Hard coral |
| Pocillopora | Pocill | Hard coral |
| Porites non-massive | PONM | Hard coral |
| Porites | Porit | Hard coral |
| Psammocora | Psam | Hard coral |
| Recent Dead Coral | REDC | Hard coral |
| Sandolitha | Sando | Hard coral |
| Scolymia | SCOL | Hard coral |
| Seriatopora | SER | Hard coral |
| Stylophora | STY | Hard coral |
| Symphyllia | Symp | Hard coral |
| Turbinaria (coral) | TURB | Hard coral |
| Ascidian | A | Other Invertebrates |
| Alcyoniidae | ALC-SF | Other Invertebrates |
| Cladiella | Clad | Other Invertebrates |
| Cliona | Clio | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Heliopora | Helio | Other Invertebrates |
| Hydroid | Hydra | Other Invertebrates |
| Millepora | Mille | Other Invertebrates |
| softcoral_ nephtheidae | NEP | Other Invertebrates |
| Other soft coral | OTH-SF | Other Invertebrates |
| Sponges: Erect forms | SE | Other Invertebrates |
| Tubipora musica | Tubi | Other Invertebrates |
| XENIIDAE | XEN | Other Invertebrates |
| Xenia | Xeni | Other Invertebrates |
| Zoanthid | ZOAN | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| All other | Other | Other |
| Unclear | Unc | Other |
| Algal Assemblage | AA | Algae |
| Asparagopsis | ASP | Algae |
| Blue-Green Algae | BLGR | Algae |
| Brown algae, thin film | BRTF | Algae |
| Caulerpa | Caul | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Chlorodesmis sp. | Chlor | Algae |
| Algae (fleshy) | FALG | Algae |
| Algae (filamentous) | FIL_A | Algae |
| Green algae, unidentified | GRAL | Algae |
| Halimeda | Hali | Algae |
| Macroalgae | Macro | Algae |
| Macroalgae: Encrusting: brown | MAENB | Algae |
| Macroalgae: Encrusting: red | MAENR | Algae |
| Seagrass | Seagrass | Seagrass |