| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | Aca | Hard coral |
| Acropora | Acr | Hard coral |
| Alveopora | Alveopora | Hard coral |
| Astreopora | Astreo | Hard coral |
| Blastomussa | Bla | Hard coral |
| Caulastrea | Caula | Hard coral |
| Coscinaraea | Cos | Hard coral |
| Cyphastrea | Cyp | Hard coral |
| Diploastrea | Diplo | Hard coral |
| Dipsastraea | Dipsa | Hard coral |
| Echinophyllia | Echphy | Hard coral |
| Echinopora | Echpo | Hard coral |
| Favites | Favit | Hard coral |
| Fungiidae | Fungii | Hard coral |
| Galaxea | Gal | Hard coral |
| Gardineroseris | Gardineros | Hard coral |
| Goniastrea | Gonia | Hard coral |
| Goniopora | Gonio | Hard coral |
| Hard coral | HC | Hard coral |
| Hydnophora | Hydno | Hard coral |
| Isopora | Iso | Hard coral |
| Leptastrea | Lepta | Hard coral |
| Leptoria | Leptor | Hard coral |
| Leptoseris | Leptos | Hard coral |
| Lobophyllia | Lobo | Hard coral |
| Merulina | Merulina | Hard coral |
| Montastraea | Monta | Hard coral |
| Montipora | Monti | Hard coral |
| Mycedium | Myc | Hard coral |
| Oulophyllia | Oul | Hard coral |
| Oxypora | Oxyp | Hard coral |
| Pachyseris | Pachy | Hard coral |
| Pavona | Pav | Hard coral |
| Physogyra | Phy | Hard coral |
| Platygyra | Platy | Hard coral |
| Plerogyra | Plero | Hard coral |
| Pocillopora | Poc | Hard coral |
| Porites (branching) | PorB | Hard coral |
| Porites (massive) | PorM | Hard coral |
| Psammocora | Psa | Hard coral |
| Seriatopora | Ser | Hard coral |
| Stylophora | Styl | Hard coral |
| Symphyllia | Sym | Hard coral |
| Turbinaria (coral) | Turb_HC | Hard coral |
| Aglaophenia spp. | Agl | Other Invertebrates |
| Anemone | Anemone | Other Invertebrates |
| Bivalve | Bivalve | Other Invertebrates |
| Bryozoan | Bryo | Other Invertebrates |
| Corallimorpharia | Coralli | Other Invertebrates |
| Didemnidae | Didae | Other Invertebrates |
| Hydroid | Hydroid | Other Invertebrates |
| Millepora | Mil | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Tubipora musica | Tubmus | Other Invertebrates |
| Tunicate | Tunicate | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| XENIIDAE | Xendae | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Biofilm | biofilm | Soft Substrate |
| Rhytisma | Rhy | Soft Substrate |
| Sand | Sand | Soft Substrate |
| Dead coral | dead | Hard Substrate |
| Hard Substrate | HS_AR | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Cyanobacteria | Cyano | Other |
| Framer | Frame | Other |
| Rubble | Rubble | Other |
| Unknown | Unknown | Other |
| Ochrophyta | BA | Algae |
| Caulerpa | Cau | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dic | Algae |
| Algae (filamentous) | Fila | Algae |
| Chlorophyta | GA | Algae |
| Halimeda | Hal | Algae |
| Lobophora variegata | Lobvar | Algae |
| Macroalgae | MA | Algae |
| Padina | Pad | Algae |
| Rhodophyta | RA | Algae |
| Sargassum | Sar | Algae |
| Turf algae | TA | Algae |
| Turbinaria (algae) | Turb_MA | Algae |
| Valonia spp. | Val | Algae |
| Seagrass | SG | Seagrass |