| Name | Short Code | Functional Group |
|---|---|---|
| Acropora abrotanoides | AABR | Hard coral |
| Acropora azurea | AAZU | Hard coral |
| Acropora (caespitose) | ACCE | Hard coral |
| Acropora (corymbose) | ACCO | Hard coral |
| Acropora (digitate) | ACDI | Hard coral |
| Acropora cophodactyla | ACOP | Hard coral |
| Astrea curta | ACUR | Hard coral |
| Acropora digitifera | ADIG | Hard coral |
| Acanthastrea echinata | AECH | Hard coral |
| Acropora globiceps | AGLO | Hard coral |
| Acropora humilis | AHUM | Hard coral |
| Acropora latistella | ALAT | Hard coral |
| Acropora monticulosa | AMON | Hard coral |
| Acropora muricata | AMUR | Hard coral |
| Acropora muricata bleached | AMUR-BL | Hard coral |
| Astreopora myriophthalma | AMYR | Hard coral |
| Acropora palmerae | APAL | Hard coral |
| Acropora cf. pulchra | APUL | Hard coral |
| Acropora cf. pulchra (bleached) | APUL-BL | Hard coral |
| Astreopora | ASSP | Hard coral |
| Acropora surculosa | ASUR | Hard coral |
| Acropora tenuis | ATEN | Hard coral |
| Acropora verweyi | AVER | Hard coral |
| Coscinaraea columna | CCOL | Hard coral |
| Cyphastrea | CYSP | Hard coral |
| Diploastrea heliopora | DHEL | Hard coral |
| Echinophyllia | ECHS | Hard coral |
| Echinopora | ECSP | Hard coral |
| Favites abdita | FABD | Hard coral |
| Dipsastraea | FASP | Hard coral |
| Favites | FAVS | Hard coral |
| Favites flexuosa | FFLE | Hard coral |
| Dipsastraea pallida | FPAL | Hard coral |
| Goniastrea stelligera | FSTE | Hard coral |
| Fungia | FUSP | Hard coral |
| Goniastrea edwardsi | GEDW | Hard coral |
| Galaxea fascicularis | GFAS | Hard coral |
| Goniopora fruticosa | GFRU | Hard coral |
| Goniastrea | GON | Hard coral |
| Goniopora | GOSP | Hard coral |
| Goniastrea pectinata | GPEC | Hard coral |
| Gardineroseris planulata | GPLA | Hard coral |
| Goniastrea retiformis | GRET | Hard coral |
| Herpolitha | HLIM | Hard coral |
| Hydnophora microconos | HMIC | Hard coral |
| Isopora | IPAL | Hard coral |
| Leptastrea | LESP | Hard coral |
| Lobophyllia | LOBO | Hard coral |
| Leptoria | LPHR | Hard coral |
| Leptastrea purpurea | LPUR | Hard coral |
| Leptastrea transversa | LTRA | Hard coral |
| Merulina | MAMP | Hard coral |
| Millepora platyphylla | MIPL | Hard coral |
| Montastraea | MONT | Hard coral |
| Montipora | MOSP | Hard coral |
| Montipora verrucosa | MVER | Hard coral |
| Oulophyllia | OCRI | Hard coral |
| Porites annae | PANN | Hard coral |
| Pavona | PAVS | Hard coral |
| Pavona chiriquiensis | PCHI | Hard coral |
| Porites cylindrica | PCYL | Hard coral |
| Platygyra daedalea | PDAE | Hard coral |
| Pocillopora damicornis | PDAM | Hard coral |
| Pavona decussata | PDEC | Hard coral |
| Porites deformis | PDEF | Hard coral |
| Psammocora haimiana | PDIG | Hard coral |
| Pavona duerdeni | PDUE | Hard coral |
| Pocillopora elegans | PELE | Hard coral |
| Pocillopora grandis (eydouxi) | PEYD | Hard coral |
| Platygyra | PLAT | Hard coral |
| Pocillopora ligulata | PLIG | Hard coral |
| Plesiastrea versipora | PLVE | Hard coral |
| Pocillopora meandrina | PMEA | Hard coral |
| Pocillopora | POCS | Hard coral |
| Porites Sub-Massive | POSB | Hard coral |
| Porites (massive) | POSM | Hard coral |
| Porites | POSP | Hard coral |
| Platygyra pini | PPIN | Hard coral |
| Porites rus | PRUS | Hard coral |
| Porites rus - White Syndrome | PRWS | Hard coral |
| Pocillopora setchelli | PSET | Hard coral |
| Pachyseris | PSPE | Hard coral |
| Psammocora | PSSP | Hard coral |
| POLYPHYLLIA | PTAL | Hard coral |
| Pavona varians | PVAR | Hard coral |
| Pocillopora verrucosa | PVER | Hard coral |
| Recent Dead Coral | REDC | Hard coral |
| Stylocoeniella | SARM | Hard coral |
| Scapophyllia | SCYL | Hard coral |
| Stylophora | SMOR | Hard coral |
| Turbinaria reniformis | TREN | Hard coral |
| Turbinaria stellulata | TSTE | Hard coral |
| Crown of Thorns Sea Star | APLA | Other Invertebrates |
| Echinoderms: Sea stars | ASTE | Other Invertebrates |
| Corallimorpharia | CORM | Other Invertebrates |
| Coralliophila violacea | CVI | Other Invertebrates |
| Dysidea sp | DYS | Other Invertebrates |
| Echinoderms: sea urchin | ECH | Other Invertebrates |
| Heliopora coerulea | HCOE | Other Invertebrates |
| Sea cucumber | HOLO | Other Invertebrates |
| Millepora_arborescent | MISP | Other Invertebrates |
| Molluscs | MOLL | Other Invertebrates |
| Sarcophyton | SARC | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Encrusting sponge | SEN | Other Invertebrates |
| Sponges: Erect forms | SER | Other Invertebrates |
| Sinularia | SINU | Other Invertebrates |
| Sponges: Terpios | TERP | Other Invertebrates |
| Tridacna: Giant clam | TRID | Other Invertebrates |
| Zoanthid | Z | Other Invertebrates |
| Sand | SAND | Soft Substrate |
| Thin Sediment over Rock | SHB | Soft Substrate |
| Thin Turf/Biofilm on Rock | TURF | Hard Substrate |
| Cyanobacteria | CYAN | Other |
| Framer | FRA | Other |
| Rubble | RB | Other |
| Shadow | SHAD | Other |
| TAPE | TAPE | Other |
| Actinotrichia sp. | ACTO | Algae |
| Amphiroa sp. | AMP | Algae |
| Asparagopsis | ASP | Algae |
| Macroalgae: Articulated calcareous | BCAA | Algae |
| Branching coralline algae -non-articulated | BCAN | Algae |
| Brown fleshy algae | BFA | Algae |
| Bryopsis spp. | BRYP | Algae |
| Crustose coralline algae | CCA | Algae |
| Non CCA Crustose Algae | CCRA | Algae |
| Chrysophyta | CHRY | Algae |
| Caulerpa | CLP | Algae |
| Dead Halimeda | DHAL | Algae |
| Dictyota | DICT | Algae |
| Macroalgae | FMA | Algae |
| Macroalgae: Erect coarse branching | FMAC | Algae |
| Macroalgae: Encrusting: brown | FMAD | Algae |
| Green fleshy algae | GFA | Algae |
| Galaxaura | GLXU | Algae |
| Halimeda | HALI | Algae |
| Halimeda (disc sediments) | HS | Algae |
| Mastophora_articulated_calcareous | MAST | Algae |
| Neomeris | NEOM | Algae |
| Padina | PAD | Algae |
| Red fleshy algae | RFA | Algae |
| Turbinaria (algae) | TURB | Algae |
| Turf growing on hard substrate | TURS | Algae |
| Tydemania spp. | TYDM | Algae |
| Seagrass (Enhalus acoroides) | ENHA | Seagrass |