| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FaviaFrag | Hard coral |
| Isophyllia sinuosa | IsophSin | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Madracis mirabilis | MAMI | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Mycetophyllia | Mycetophy | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites divaricata | PorDiv | Hard coral |
| Porites furcata | PorFurc | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria clivosa | PseuCliv | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Scolymia | SCOL | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Stephanocoenia michellini | SMIC | Hard coral |
| Solenastrea bournoni | SOLBOU | Hard coral |
| Gorgonia ventalina | Gven | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Plexaura spp. | PLESPP | Other Invertebrates |
| Pseudopterogorgia | Pseudopter | Other Invertebrates |
| Pterogorgia | Pterogorg | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Bare space | Bare | Other |
| Other | O | Other |
| PVC | PVC | Other |
| Caulerpa | Caulerpa | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Cladophora sp. | Cldph | Algae |
| Dictyosphaeria | Dictyosph | Algae |
| Dictyota | Dictyota | Algae |
| Galaxaura | Galaxaura | Algae |
| Halimeda | Halimeda | Algae |
| Lobophora | Lobophora | Algae |
| Microdictyon | Microdicty | Algae |
| Padina | Padina | Algae |
| Penicillus spp. | PENCIL | Algae |
| Rhipocephalus phoenix | Rhipo.phoe | Algae |
| Sargassum | Sargassum | Algae |
| Stypopodium sp. | Styp | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf | Algae |
| Udotea spp. | UDOT | Algae |
| Valonia spp. | Valspp | Algae |