| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Agaricia undata | AgUnd | Hard coral |
| Agaricia/Undaria | BL-Aga | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Coral | Coral | Hard coral |
| Acropora (arborescent) | D-Apalm | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Favia fragum | Favia | Hard coral |
| Madracis auretenra | MadAure | Hard coral |
| Montastrea cavernosa | MoCav | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Porites astreoides | PAstr | Hard coral |
| Porites furcata | PorFurc | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Anemone | Anem | Other Invertebrates |
| Echinoderms: Ophiuroids:Brittle / snake stars | Brittle | Other Invertebrates |
| Cliona | Clio | Other Invertebrates |
| Corallimorpharia | Cmorph | Other Invertebrates |
| Sea cucumber | cucumber | Other Invertebrates |
| Diadema antillarum | Diad | Other Invertebrates |
| Millepora | D-Mill | Other Invertebrates |
| Echinometra viridis | Echino | Other Invertebrates |
| Sponge: Encrusting | EncSpo | Other Invertebrates |
| Worms: Polychaetes: Tube worms | FthrWrm | Other Invertebrates |
| Anemone, unidentified | GntAnen | Other Invertebrates |
| Tunicate | GntTun | Other Invertebrates |
| Millepora alcicornis | Millalc | Other Invertebrates |
| Millepora complanata | Millcomp | Other Invertebrates |
| Echinometra spp | MINV_Ech | Other Invertebrates |
| Octocorallia | Octocoral | Other Invertebrates |
| Palythoa | Paly | Other Invertebrates |
| Tube or Rod Sponge | RopSp | Other Invertebrates |
| Sea Fan | Seafan | Other Invertebrates |
| Soft Coral | SoftCoral | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Polychaete - tube worm | Tube Worm | Other Invertebrates |
| Individual Tunicates | Tunict | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Coral rubble | Rubble_cor | Soft Substrate |
| Sand | Sand | Soft Substrate |
| Dead coral | D-Cor | Hard Substrate |
| Dead Coral with Turf Sediment (LOF) | DEAD+TS | Hard Substrate |
| Rock Rubble | RockRub | Hard Substrate |
| Dead coral with algae | DeadAlg | Other |
| Millepora 2 | PB-Mill | Other |
| Broken coral rubble | PorRub | Other |
| Amphiroa sp. | Amphi | Algae |
| Benthic Microalgae on Sand | BMA-Sand | Algae |
| Caulerpa | Caulerpa | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dictyota | Algae |
| Macroalgae: Encrusting: calcareous | EncAlg | Algae |
| Red fleshy algae | FlRedAlg | Algae |
| Halimeda | Halimeda | Algae |
| Lobophora | Loboph | Algae |
| Macroalgae | MAL | Algae |
| Algae (fleshy) | MixFlsyAlg | Algae |
| Peyssonnelia | Peysson | Algae |
| Porolithon | Porolith | Algae |
| Turf Algae on Dead Coral (+ rubble) | TA on Dead | Algae |
| Ventricaria sp. | Ventr | Algae |
| White CCA | whtCCA | Algae |
| Seagrass | Seagrass | Seagrass |