| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AGa | Hard coral |
| Agaricia agaricites - Bleached | AGa+CoB | Hard coral |
| Agaricia fragilis | AGf | Hard coral |
| Agaricia humilis | AGh | Hard coral |
| Astrangia | ASso | Hard coral |
| Bleached Astrangia | ASso+CoB | Hard coral |
| Dead Astrangia | ASso+RCD | Hard coral |
| Favia gravida | FAg | Hard coral |
| Bleached Favia gravida | FAg+CoB | Hard coral |
| Dead Favia gravida | FAg+RCD | Hard coral |
| Mussismilia leptophylla | FAl | Hard coral |
| Hard coral | HC | Hard coral |
| Madracis decactis | MADd | Hard coral |
| Madracis decactis - Bleached | MADd+CoB | Hard coral |
| Madracis decactis - Dead | MADd+RCD | Hard coral |
| Meandrina braziliensis | MEb | Hard coral |
| Bleached Meandrina braziliensis | MEb+CoB | Hard coral |
| Dead Meandrina braziliensis | MEb+RCD | Hard coral |
| Bleached Millepora alcicornis | MILA+CoB | Hard coral |
| Dead Millepora alcicornis | MILA+RCD | Hard coral |
| Bleached Millepora braziliensis | MILb+CoB | Hard coral |
| Montastraea cavernosa | MOca | Hard coral |
| Montastraea cavernosa - Bleached | MOca+CoB | Hard coral |
| Montastraea cavernosa - Dead | MOca+RCD | Hard coral |
| White Montastraea cavernosa | MOca+W | Hard coral |
| Mussismilia braziliensis | MUbr | Hard coral |
| Bleached Mussismilia braziliensis | MUbr+CoB | Hard coral |
| Dead Mussismilia brazilienses | MUbr+RCD | Hard coral |
| Mussismilia harttii | MUha | Hard coral |
| Bleached Mussismilia harttii | MUha+CoB | Hard coral |
| Dead Mussismilia harttii | MUha+RCD | Hard coral |
| Mussismilia hispida | MUhi | Hard coral |
| Bleached Mussismilia hispida | MUhi+CoB | Hard coral |
| Dead Mussismilia hispida | MUhi+RCD | Hard coral |
| Diseased Coral | OCD | Hard coral |
| Porites astreoides | PORa | Hard coral |
| Bleached Porites astreoides | PORa+CoB | Hard coral |
| Dead Porites astreoides | PORa+RCD | Hard coral |
| Porites branneri | PORb | Hard coral |
| Bleached Porites branneri | PORb+CoB | Hard coral |
| Dead Porites branneri | PORb+RCD | Hard coral |
| Protopalythoa Spp | PRPSPP | Hard coral |
| Recruit | REC | Hard coral |
| Scolymia cubensis | SCcu | Hard coral |
| Scolymia wellsi | SCw | Hard coral |
| Scolymia cubensis - Bleached | SCw+CoB | Hard coral |
| Scolymia cubensis - Dead | SCw+RCD | Hard coral |
| Siderastrea | SID | Hard coral |
| Bleached Siderastrea | SID+CoB | Hard coral |
| Siderastrea siderea - Dead | SID+RCD | Hard coral |
| Stephanocoenia michellini | STEm | Hard coral |
| Stylaster roseus | STYr | Hard coral |
| Tubastraea coccinea | Tcoc | Hard coral |
| Tubastraea taguesensis | Ttag | Hard coral |
| Unknown Hard Coral | UnC | Hard coral |
| Alicia mirabilis | ALim | Other Invertebrates |
| Aplysina spp. | APLY | Other Invertebrates |
| Ascidian (solitary) | ASCI | Other Invertebrates |
| Briozoo | BRIO | Other Invertebrates |
| Carijoa riisei | CAri | Other Invertebrates |
| Cliona spp. | CLIO | Other Invertebrates |
| Ascidian (colonial) | CoAs | Other Invertebrates |
| Condylactis gigantea | COgi | Other Invertebrates |
| Diadema antillarum | DIAD | Other Invertebrates |
| Discosoma carlgreni | DICc | Other Invertebrates |
| Echinometra lucunter | EClu | Other Invertebrates |
| Ellisella spp. | ELLI | Other Invertebrates |
| Epizoanthus sp. | Epi | Other Invertebrates |
| Briareum | GORG-BRI | Other Invertebrates |
| Heterogorgia uatumani | HEau | Other Invertebrates |
| Lebrunia spp. | LEBR | Other Invertebrates |
| Lytechinus variegatus | LYva | Other Invertebrates |
| Millepora alcicornis | MILa | Other Invertebrates |
| Millepora braziliensis | MILb | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Millepora nitida | MILn | Other Invertebrates |
| Monanchora-sp-3 | MONA | Other Invertebrates |
| Muricea flamma | MUF | Other Invertebrates |
| Muricea sulphurea | MUSU | Other Invertebrates |
| Neospongodes atlantica | NEat | Other Invertebrates |
| Other sessile invertebrates | Olive | Other Invertebrates |
| Unidentified Octocoral | Ooct | Other Invertebrates |
| Sponge Other | OSp | Other Invertebrates |
| Sea Urchin | OSU | Other Invertebrates |
| Worms: Polychaetes | OtPol | Other Invertebrates |
| Palythoa caribaeorum | PAca | Other Invertebrates |
| protopalythoa variabilis | PcVa | Other Invertebrates |
| Protopalythoa variabilis bleached | PcVa+ZoB | Other Invertebrates |
| Phyllogorgia dilatata | PHdi | Other Invertebrates |
| Plexaurella grandiflora | PLgr | Other Invertebrates |
| Plexaurella regia | PLre | Other Invertebrates |
| Sarcothelia sp. | Sarcoth | Other Invertebrates |
| Echinoderms: Sea stars | SeaS | Other Invertebrates |
| Echinoderms: Ophiuroids: Brittle/Snake: Oth | SerpS | Other Invertebrates |
| Echinoderms: Feather stars | SeSt | Other Invertebrates |
| Solanderia spp. | SOLA | Other Invertebrates |
| Spirorbid worms | SpPol | Other Invertebrates |
| Zoanthus sociatus_ | ZOAN | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Agaricia agaricites - Dead | CD-AAGA | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Antipathes sp. | ANTI | Other |
| Black Fungus Disease (BFD) | BBD | Other |
| Cirripathes sp. | CIRR | Other |
| Broken coral rubble | C-Rubble | Other |
| Cyanobacteria | CYAb | Other |
| Dead Palythoa | DPCAR | Other |
| other disease | OD | Other |
| Shadow_TWS | Shad | Other |
| Holes | Shad+HOLE | Other |
| Tape_TWS | Tape | Other |
| Unknown | Unk | Other |
| Wand_TWS | Wand | Other |
| white band disease | WBD | Other |
| Yellow band disease | YBD | Other |
| Articulate Calcareous Algae (ACA) | AC | Algae |
| Asparagopsis | ASPA | Algae |
| Red Turf | Bn-Tf | Algae |
| Caulerpa racemosa | CAra | Algae |
| Caulerpa spp. | CAUL | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dasycladus vermicularis | Dave | Algae |
| Dictyosphaeria cavernosa | DIca | Algae |
| Dictyopteris | Dpyteris | Algae |
| Dictyota | Dta | Algae |
| Ellisolandia elongata | Ellis | Algae |
| Halimeda | HA | Algae |
| Turf+ Cyanobacteria | MCT | Algae |
| Ochtodes secyndiramea | OCse | Algae |
| Macroalgae 1 | OtFr | Algae |
| Penicillus spp. | PEN | Algae |
| Sargassum | SARG | Algae |
| Turf algae | TURF | Algae |
| Udotea spp. | UDOT | Algae |
| Unknown macroalgae | UnFr | Algae |
| Valonia spp. | VALO | Algae |