| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Acropora prolifera | AcrPro | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Bleached Hard Coral | BLHard | Hard coral |
| Dichocoenia stokesi | CIST | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| COLPOPHYLLIA NATANS w White Pox | CoNat-WPox | Hard coral |
| Dendrogyra cylindrus | DEC | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Diseased Coral | DISCORAL | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FAF | Hard coral |
| Hard coral bleached | HC bleach | Hard coral |
| Helioseris cucullata | HCucu | Hard coral |
| Live Coral | LICO | Hard coral |
| Madracis auretenra | MADAUR | Hard coral |
| MASE: Bleached | MASE_BLC | Hard coral |
| Madracis decacitis | MD | Hard coral |
| Montastraea faveolata | MF | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Orbicella annularis | ORBANN | Hard coral |
| Orbicella faveolata | ORBFAV | Hard coral |
| Orbicella franksi | ORBFRA | Hard coral |
| Porites divaricata | PD | Hard coral |
| Porites furcata | PF | Hard coral |
| Porites porites | POP | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Pseudodiploria strigosa | PSESTR | Hard coral |
| Scolymia | SCOL | Hard coral |
| Siderastrea radians | SIDRAD | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Stephanocoenia intersepta | STEINT | Hard coral |
| 1m Xestospongia muta | 100cXmuta | Other Invertebrates |
| 10cm Xestospongia muta | 10cXmuta | Other Invertebrates |
| 1cm Xestospongia Muta | 1cXmuta | Other Invertebrates |
| 20cm Xestospongia muta | 20cXmuta | Other Invertebrates |
| 3cm Xestospongia muta | 3cXmuta | Other Invertebrates |
| 50cm Xestospongia muta | 50cXmuta | Other Invertebrates |
| 5cm Xestospongia muta | 5cXmuta | Other Invertebrates |
| 7cm Xestospongia muta | 7cXmuta | Other Invertebrates |
| Anemone | Anemone | Other Invertebrates |
| Briareum asbestinum | BRIASB | Other Invertebrates |
| Callyspongia spp. | Cal_spp | Other Invertebrates |
| Cliona delitrix | CD | Other Invertebrates |
| Erythropodium caribaeorum | ERYCAR | Other Invertebrates |
| Gneptuni | Gnep | Other Invertebrates |
| Sea fans/plumes | GORG | Other Invertebrates |
| Sea fans/plumes Bleached | GORG-B* | Other Invertebrates |
| Ircinia_massive | IRCI | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Octocorallia | Octo | Other Invertebrates |
| Other invertebrate | Other Inv | Other Invertebrates |
| Palythoa caribaeorum | PCAR | Other Invertebrates |
| Plexaura spp. | PLESPP | Other Invertebrates |
| Sea Fan | Seafan | Other Invertebrates |
| Sponge - any | SPG | Other Invertebrates |
| Sponge | Sponge | Other Invertebrates |
| Tunicate | Tnce | Other Invertebrates |
| Zooanthid | Zoo | Other Invertebrates |
| Mud | MUD | Soft Substrate |
| Sand | Sand | Soft Substrate |
| Dead coral | Dead | Hard Substrate |
| Pavement | Pav | Hard Substrate |
| Schizothrix | Cyan red | Other |
| Quadrat | QUD | Other |
| Shadow | SHAD | Other |
| Rubble | SOFT_RUBB | Other |
| TAPE | TAPE | Other |
| Turf algal sediment matrix | TAS | Other |
| Unknown | Unk | Other |
| white band disease | WBD | Other |
| Yellow band disease | YBD | Other |
| Brown fleshy algae | BrFlesAlg | Algae |
| Leptolyngbya sp. | brnblob | Algae |
| Caulerpa | Caul | Algae |
| Crustose coralline algae | CCA 1 | Algae |
| Dictyosphaeria cavernosa | DCav | Algae |
| Dictyota spp | Dict | Algae |
| Green fleshy algae | GFA | Algae |
| Halimeda spp. | Hal_spp | Algae |
| Jania spp. | JaSpp | Algae |
| Lobophora variegata | LopVar | Algae |
| Lyngbya spp. | Lyn_spp | Algae |
| Penicillus spp. | PENCIL | Algae |
| Peyssonnelia | Peysson | Algae |
| Phormidium sp. | Pho_spe | Algae |
| Porolithon | Poro | Algae |
| Red fleshy algae | RFA | Algae |
| Sargassum spp. | SARG. | Algae |
| Stypopodium zonale | STYZO | Algae |
| Symploca sp. | Sym_spe | Algae |
| Turbinaria spp. | TUR | Algae |
| Turf algae | Turf_algae | Algae |
| Turf overgrowing recently dead coral | Turf coral | Algae |