| Name | Short Code | Functional Group |
|---|---|---|
| Diseased Coral | DISCORAL | Hard coral |
| Fungia | Fungia | Hard coral |
| Hard coral broken | HC_broke | Hard coral |
| Hard Coral Growth Anomaly | HCGA | Hard coral |
| Leptastrea bewickensis | LEBEW | Hard coral |
| Leptastrea purpurea | LPurp | Hard coral |
| Montipora capitata | MontiCap | Hard coral |
| Montipora flabellata | MontiFlab | Hard coral |
| Montipora patula | MontiPat | Hard coral |
| No Disease | NODZ | Hard coral |
| Pavona duerdeni | PavDue | Hard coral |
| Pavona varians | PavVar | Hard coral |
| Pocillopora damicornis | PocDam | Hard coral |
| Pocillopora grandis (eydouxi) | PocGran | Hard coral |
| Pocillopora meandrina | PocMea | Hard coral |
| Porites compressa | PorComp | Hard coral |
| Porites lobata | PorLob | Hard coral |
| Recently killed coral | RKC | Hard coral |
| Soft Coral | SC | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Tunicates | Tunic | Other Invertebrates |
| Zooanthid | Zoo | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Silt/Clay | Silt | Soft Substrate |
| Dead coral | D_coral | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Holes | Holes | Other |
| Other | O | Other |
| Rubble | Rubble | Other |
| Trash | Trash | Other |
| Unknown | Unk | Other |
| CCA (crustose coralline algae) | CCA | Algae |
| Nutrient Indicator Algae | NIA | Algae |