| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AAga | Hard coral |
| Acropora cervicornis | ACerv | Hard coral |
| Agaricia | Agaricia | Hard coral |
| Agaricia lamarcki | ALam | Hard coral |
| Acropora palmata | APalm | Hard coral |
| Colpophyllia natans | CNat | Hard coral |
| Dendrogyra cylindrus | DCyl | Hard coral |
| Diploria labyrinthiformis | DLab | Hard coral |
| Dichocoenia stokesi | DSto | Hard coral |
| Eusmilia fastigiata | EFas | Hard coral |
| Favia fragum | FFra | Hard coral |
| Hard coral | HC | Hard coral |
| Helioseris cucullata | HCuc | Hard coral |
| Mycetophyllia aliciae | MAli | Hard coral |
| Madracis auretenra | MAur | Hard coral |
| Montastraea cavernosa | MCav | Hard coral |
| Mycetophyllia danaana | MDan | Hard coral |
| Madracis decactis | MDec | Hard coral |
| Mycetophyllia ferox | MFer | Hard coral |
| Millepora spp. - Bleached | MIL-FB | Hard coral |
| Meandrina jacksoni | MJac | Hard coral |
| Mycetophyllia lamarckana | MLam | Hard coral |
| Meandrina meandrites | MMea | Hard coral |
| Mycetophyllia | Myce Spp. | Hard coral |
| Orbicella annularis | OAnn | Hard coral |
| Orbicella faveolata | OFav | Hard coral |
| Orbicella franksi | OFran | Hard coral |
| Porites astreoides | PAst | Hard coral |
| Pseudodiploria clivosa | PCli | Hard coral |
| Porites divaricata | PDiv | Hard coral |
| Porites furcata | PFur | Hard coral |
| Porites porites | PPor | Hard coral |
| Pseudodiploria strigosa | PStr | Hard coral |
| Solenastrea bournoni | SBou | Hard coral |
| Stephanocoenia intersepta | SInt | Hard coral |
| Siderastrea radians | SRad | Hard coral |
| Siderastrea siderea | SSid | Hard coral |
| Tubastrea coccinea | TCoc | Hard coral |
| Anemone | Anemone | Other Invertebrates |
| Antipatharia | Ant | Other Invertebrates |
| Ascidian | ASCD | Other Invertebrates |
| Ball Sponge | BallSpong | Other Invertebrates |
| Barnacles | Barn | Other Invertebrates |
| Benthic Invertebrate | BInv | Other Invertebrates |
| Bryozoan | bryozoan | Other Invertebrates |
| Barrel Sponge | BSpo | Other Invertebrates |
| Corallimorpharia | Collimorph | Other Invertebrates |
| Diadema sp | DIAS | Other Invertebrates |
| Echinoderms: Feather stars | EFS | Other Invertebrates |
| Encrusting gorgonian | EncGor | Other Invertebrates |
| Millepora_encrusting | EncMil | Other Invertebrates |
| Encrusting sponge | EncSpo | Other Invertebrates |
| Echinoderms: Ophiuroids:Brittle / snake stars | EOBRI | Other Invertebrates |
| Flamingo tongue | Flam_ton | Other Invertebrates |
| Tridacna: Giant clam | GiCl | Other Invertebrates |
| Sea fans/plumes | GORG | Other Invertebrates |
| Hydroid | Hydra | Other Invertebrates |
| invertebrate | Invert | Other Invertebrates |
| Lumpy Overgrowing Sponge | LOG | Other Invertebrates |
| Millepora alcicornis | MAlc | Other Invertebrates |
| Millepora complanata | MCom | Other Invertebrates |
| Millepora | Mil Spp. | Other Invertebrates |
| Crinoids. | MINV_CRI | Other Invertebrates |
| Molluscs: Chitons | MOCH | Other Invertebrates |
| Millepora squarrosa | MSqu | Other Invertebrates |
| Nudibranch species | Nudi Spp. | Other Invertebrates |
| Queen Conch | Qcon | Other Invertebrates |
| Rope sponge | ROSP | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sponge | Sponge | Other Invertebrates |
| Vase sponge | SPvase | Other Invertebrates |
| Asteroidea | STF | Other Invertebrates |
| Tunicate | Tunicate | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Christmas Tree Worm | XmasW | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Sea Rod | ARMS-ESPP | Soft Substrate |
| Biofilm | biofilm | Soft Substrate |
| Sand | Sand | Soft Substrate |
| Silt/Clay | Silt | Soft Substrate |
| Dead coral | D_coral | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Dead coral with algae | Dead+Alg | Other |
| Metal | metal | Other |
| Rubble | Rubble | Other |
| Unknown | Unk | Other |
| Water | WATER | Other |
| Amphiroa sp. | Amphi | Algae |
| Caulerpa spp. | CAUL. | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Codium spp. | CoSpp | Algae |
| Dictyota | Dictyota | Algae |
| Galaxaura spp. | Gaspp | Algae |
| Halimeda | Halimeda | Algae |
| Lobophora spp. | Lob_spp | Algae |
| Macroalgae | MicroAL | Algae |
| Macroalgae: Laminate: red: peysonnelia | MLRP | Algae |
| Padina spp. | Pad_spp | Algae |
| Red Turf | RedTurf | Algae |
| Sargassum spp. | SARG. | Algae |
| Tricleocarpa | TRIcleocar | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf | Algae |
| Udotea spp. | UDOT | Algae |
| Valonia spp. | Valspp | Algae |
| Valonia ventricosa | Vavent | Algae |
| Wrangelia | WRA | Algae |
| Halodule wrightii | HalodWri | Seagrass |
| Seagrass | Seagrass | Seagrass |
| Syringodium filiforme | SyrFil | Seagrass |
| Thalassia testudinum | ThalTes | Seagrass |