| Name | Short Code | Functional Group |
|---|---|---|
| Acropora | Acropora | Hard coral |
| Alveopora | Alveopora | Hard coral |
| Astreopora | Astreo | Hard coral |
| Bleached Hard Coral | B_HC | Hard coral |
| Coscinaraea | Cosci | Hard coral |
| Ctenactis | Ctena | Hard coral |
| Cycloseris | Cyclo | Hard coral |
| Cyphastrea | Cypha | Hard coral |
| Diploastrea | Diplo | Hard coral |
| Diseased Coral | DISCORAL | Hard coral |
| Echinopora | Echinopora | Hard coral |
| Euphyllia | Euphyllia | Hard coral |
| Favia | fav | Hard coral |
| Favites | Favites | Hard coral |
| Fungia | Fungia | Hard coral |
| Galaxea | Galaxea | Hard coral |
| Gardineroseris | Gardineros | Hard coral |
| Goniastrea | Goniastrea | Hard coral |
| Goniopora | Goniopora | Hard coral |
| Hydnophora | Hydno | Hard coral |
| Leptastrea | Lepta | Hard coral |
| Leptoseris | Leptoseris | Hard coral |
| Lobophyllia | Lobophyl | Hard coral |
| Merulina | Merulina | Hard coral |
| Montastraea | Montastr | Hard coral |
| Montipora | Monti | Hard coral |
| Oulophyllia | Ouloph | Hard coral |
| Oulastrea | ous | Hard coral |
| Pachyseris | Pachyseris | Hard coral |
| Pavona | Pavona | Hard coral |
| Physogyra | Phys | Hard coral |
| Platygyra | Platy | Hard coral |
| Plesiastrea | Plesiastr | Hard coral |
| Pocillopora | Pocill | Hard coral |
| Podabacia | Podbac | Hard coral |
| Porites | Porites | Hard coral |
| Recent Dead Coral | RD_HC | Hard coral |
| Seriatopora | Seriatop | Hard coral |
| Stylophora | Styloph | Hard coral |
| Symphyllia | Symph | Hard coral |
| Turbinaria (coral) | Turbinaria | Hard coral |
| Anemone | Anemone | Other Invertebrates |
| Ascidian | ASCD | Other Invertebrates |
| Crown of Thorns Sea Star | COT | Other Invertebrates |
| Sea cucumber | cucumber | Other Invertebrates |
| Echinoderms: Sea stars | ESS | Other Invertebrates |
| Molluscs: Gastropods | gastropod | Other Invertebrates |
| Tridacna: Giant clam | GiCl | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Xenia | Xeni | Other Invertebrates |
| Zooanthid | Zoo | Other Invertebrates |
| Mud | Mud | Soft Substrate |
| Sand | Sand | Soft Substrate |
| Dead coral | D_coral | Hard Substrate |
| Rock | Rock | Hard Substrate |
| background | BG | Other |
| Cyanobacteria | CYANOB | Other |
| Rubble | Rubble | Other |
| Algae (filamentous) | AL_filam | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Halimeda | Halimeda | Algae |
| Jania | Jania | Algae |
| Lobophora | Lobophora | Algae |
| Padina | Padina | Algae |
| Turf algae | Turf | Algae |
| Seagrass | Seagrass | Seagrass |