| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Bleached Hard Coral | BLHard | Hard coral |
| Porites (branching) | BRPor | Hard coral |
| Diploria labyrinthiformis | DipLab | Hard coral |
| Hard coral | HC | Hard coral |
| Millepora spp. | Mil_spp | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Pseudodiploria clivosa | PCLI | Hard coral |
| Pseudodiploria strigosa | PSTR | Hard coral |
| Recent Dead Coral | RDC | Hard coral |
| Briareum asbestinum | BriAsb | Other Invertebrates |
| Sponge: Cliona | Cli_spp | Other Invertebrates |
| Erythropodium caribaeorum | EryCar | Other Invertebrates |
| Black/Octocorals (3D): nfleshy: arborescent | Octo | Other Invertebrates |
| Palythoa | Pal_spp | Other Invertebrates |
| Sponge - any | SPG | Other Invertebrates |
| Trididemnum spp. | Tri_spp | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Sand and sediment | Sand_Mix | Soft Substrate |
| Dead coral | DC | Hard Substrate |
| Bare Rock | RC | Hard Substrate |
| Cyanobacteria films | CYAN | Other |
| Rubble | RUB | Other |
| Calcareous algae | CALG | Algae |
| Crustose coralline algae | CCA | Algae |
| Algae (fleshy) | MA | Algae |
| Macroalgae: Filamentous / filiform | MF | Algae |
| Turf algae | TA | Algae |