| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia | Agaricia | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FaviaFrag | Hard coral |
| Hard coral | HC | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria clivosa | PseuCliv | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Solenastrea bournoni | SOLBOU | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Branching Gorgonian | BrGorg | Other Invertebrates |
| Cliona spp. | CLION | Other Invertebrates |
| Sea fans/plumes | GORG | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Palythoa | PALYTHO | Other Invertebrates |
| Sponge: Cliona | SINV_SPO_C | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Thick Sediment Over Rock | ThkSedRck | Soft Substrate |
| Thin Sediment over Rock | ThnSedRck | Soft Substrate |
| Bare Rock | BARK | Hard Substrate |
| CRED-CCA growing on hard substrate | *CCAH | Hard Substrate |
| Hard Substrate | HS | Hard Substrate |
| Rock Crustose Coralline Algae | RCCA | Hard Substrate |
| Rock Turf Algae | RCTA | Hard Substrate |
| Rock | Rock | Hard Substrate |
| CRED-Rubble substrate | *RUB | Hard Substrate |
| CRED-Turf growing on hard substrate | *TURFH | Hard Substrate |
| Shadow | SHAD | Other |
| Algae | Algae | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| CCA growing on rubble | CCA_Rub | Algae |
| ARMS-Red algae | _RDAL | Algae |