| Name | Short Code | Functional Group |
|---|---|---|
| Acropora palmata | AcrPalm | Hard coral |
| Branching Coral | Branching | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Hard coral | HC | Hard coral |
| Infection_SCTLD | InfSCTLD | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Siderastrea | SSID | Hard coral |
| Barrel Sponge | BSPo | Other Invertebrates |
| Encrusting sponge | EnSP | Other Invertebrates |
| Gorgonian | GOR | Other Invertebrates |
| Sponges: Erect forms | Sp_Erect | Other Invertebrates |
| Massive or encrusting sponges | Sp_M_or_En | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Dead coral | D_coral | Hard Substrate |
| Substrate: Consolidated (hard) Boulders | Hard_Subst | Hard Substrate |
| All other | Other | Other |
| Benthic Microalgae on Sand | Ben_Micalg | Algae |
| Coral Rubble - Turf Algae | C_Rub_Turf | Algae |
| Dictyota | Dictyota | Algae |
| Macroalgae: Encrusting | MAEN | Algae |
| Rhodophyta | RHODO | Algae |
| Turf algae | Turf | Algae |