| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Agelas conifera/tubulata | AgConTub | Other Invertebrates |
| Agelas wiedenmayeri | AgeWied | Other Invertebrates |
| Aiolochroia crassa | AioloCra | Other Invertebrates |
| Amphimedon compressa | AmphComp | Other Invertebrates |
| Amphimedon spp. | Amp_spp | Other Invertebrates |
| Antillogorgia americana | AntiAme | Other Invertebrates |
| Aplysina cauliformis | AplyCau | Other Invertebrates |
| Aplysina fistularis | AplyFist | Other Invertebrates |
| Aplysina fulva | AplyFul | Other Invertebrates |
| Aplysina lacunosa | AplysiLac | Other Invertebrates |
| Axinella morchella | AxiMor | Other Invertebrates |
| Callyspongia plicifera | CallysPli | Other Invertebrates |
| Callyspongia vaginalis | CallyVa | Other Invertebrates |
| Cliona delitrix | ClioDelix | Other Invertebrates |
| Desmapsamma anchorata | DesAn | Other Invertebrates |
| Ectyoplasia ferox | EctyoFerx | Other Invertebrates |
| Encrusting sponge | EncrusSpon | Other Invertebrates |
| Erythropodium caribaeorum | EriCarb | Other Invertebrates |
| Eunicea spp. | Eucinea sp | Other Invertebrates |
| Gorgonia ventalina | GorgoVen | Other Invertebrates |
| Ircinia campana | Icampa | Other Invertebrates |
| Iotrochota birotulata | IotroBiro | Other Invertebrates |
| Ircinia strobilina | IrciStrob | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Mycale laevis | MycaLae | Other Invertebrates |
| Neopetrosia | Neopetrosi | Other Invertebrates |
| Niphates digitalis | NiphDigi | Other Invertebrates |
| Palythoa caribaeorum | PalyCarib | Other Invertebrates |
| Plakortis angulospiculatus | PlakAng | Other Invertebrates |
| Plexaurella nutans | PlexaNut | Other Invertebrates |
| Pterogorgia anceps | PteAnc | Other Invertebrates |
| Polychaete : Sabellastarte_magnifica | SabeMag | Other Invertebrates |
| Smenospongia aurea | S aurea | Other Invertebrates |
| Clathria sp. | SpongeClat | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Verongula rigida | Verongula | Other Invertebrates |
| Xestospongia muta | Xestospong | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| sediment (fine) | sed_fine | Soft Substrate |
| Cave - Medium | CaveMed | Hard Substrate |
| Cave - Small | CaveSma | Hard Substrate |
| Pavement | Pavement | Hard Substrate |
| Rubble | Rubble | Other |
| Sand / Rubble | SandRub | Other |
| white coral | Wco | Other |
| Caulerpa | Caulerpa | Algae |
| Dictyota | Dictyota | Algae |
| Encrusting Algae | EncrustAlg | Algae |
| Galaxaura | Galaxaura | Algae |
| Halimeda | Halimeda | Algae |
| Halimeda opuntia | HaliOpu | Algae |
| Jania pedunculata var. adhaerens | JaniaPedun | Algae |
| Padina | Padina | Algae |
| Turbinaria tricostata | TurbTri | Algae |
| Turf algae | Turf | Algae |
| Syringodium filiforme | SyrFil | Seagrass |
| Thalassia testudinum | ThalTes | Seagrass |