| Name | Short Code | Functional Group |
|---|---|---|
| Cyphastrea ocellina | COCE | Hard coral |
| Dictiosphaeria versluysii | DVER | Hard coral |
| Lobactis scutaria | FSCU | Hard coral |
| Leptastrea bewickensis | LBEW | Hard coral |
| Leptoseris incrustans | LINC | Hard coral |
| Leptastrea purpurea | LPUR | Hard coral |
| Montipora capitata | MCAP | Hard coral |
| Montipora flabellata | MFLA | Hard coral |
| Montipora patula | MPAT | Hard coral |
| Porites compressa | PCOM | Hard coral |
| Pocillopora damicornis | PDAM | Hard coral |
| Pavona duerdeni | PDUE | Hard coral |
| Porites evermanni | PEVE | Hard coral |
| Pocillopora grandis (eydouxi) | PEYE | Hard coral |
| Porites lobata | PLOB | Hard coral |
| Pocillopora meandrina | PMEA | Hard coral |
| Porites rus | PRUS | Hard coral |
| Pavona varians | PVAR | Hard coral |
| Unidentified Hard Coral | UNCO | Hard coral |
| Acanthaster planci | ACAN | Other Invertebrates |
| Anemone | ANEM | Other Invertebrates |
| Bryozoan | BRYO | Other Invertebrates |
| Holothuroidea | HOLO | Other Invertebrates |
| Mobile invertebrates | MINV | Other Invertebrates |
| Other sessile invertebrates | OSIN | Other Invertebrates |
| Sponge | SPNG | Other Invertebrates |
| Tunicate | TUNI | Other Invertebrates |
| Sea Urchin | URCH | Other Invertebrates |
| Zoanthid | ZOAN | Other Invertebrates |
| Sand | SAND | Soft Substrate |
| Bare Rock | BARR | Hard Substrate |
| Dead coral | REDC | Hard Substrate |
| Holes | BHOL | Other |
| Octocoral | OCTO | Other |
| Rubble | RUBL | Other |
| Shadow | Shadow | Other |
| TAPE | TAPE | Other |
| Unidentified green | UNGR | Other |
| Asparagopsis | ASPA | Algae |
| Acanthophora spicifera | ASPI | Algae |
| Avrainvillea | AVRA | Algae |
| brown encrusting algae | BRCR | Algae |
| Codium | CODI | Algae |
| Caulerpa racemosa | CRAC | Algae |
| CCA (crustose coralline algae) | CRST | Algae |
| Cladophora sericea | CSER | Algae |
| Caulerpa serrulata | CSERR | Algae |
| Dictyosphaeria cavernosa | DCAV | Algae |
| Dictyota | DICT | Algae |
| Galaxaura marginata | GMAR | Algae |
| Gelatinous red | GOOEY | Algae |
| Gracilaria salicornia | GSAL | Algae |
| Halymenia sp. | HALY | Algae |
| Hypnea musciformis | HMUS | Algae |
| Halimeda opuntia | HOPU | Algae |
| Kappaphycus sp. | KAPP | Algae |
| Liagora | LIAG | Algae |
| Lobophora | LOBO | Algae |
| Neomeris | NEOM | Algae |
| Padina | PADI | Algae |
| Sargassum | SARG | Algae |
| Stypopodium sp. | STYP | Algae |
| Turbinaria (algae) | TURB | Algae |
| Turf algae | TURF | Algae |
| Unidentified Brown | UBRN | Algae |
| Unidentified Red | URED | Algae |
| Ventricaria sp. | VENT | Algae |