| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | ACAN | Hard coral |
| Acropora | ACRO | Hard coral |
| Alveopora | ALVE | Hard coral |
| Acropora prolifera | APR | Hard coral |
| Astreopora | ASTR | Hard coral |
| Blastomussa | BLAS | Hard coral |
| Coral | C | Hard coral |
| Caulastrea | CAUL | Hard coral |
| Coscinaraea | COSC | Hard coral |
| Ctenactis | CTEN | Hard coral |
| Cyphastrea | CYPH | Hard coral |
| Diseased Coral | DCOR | Hard coral |
| Diploastrea | DIPL | Hard coral |
| Echinopora | ENOP | Hard coral |
| Echinophyllia | EPHY | Hard coral |
| Euphyllia | EUPH | Hard coral |
| Fungia | FUNG | Hard coral |
| Favia (Indo-Pacific) | FVIA | Hard coral |
| Favites | FVIT | Hard coral |
| Galaxea | GALA | Hard coral |
| Gardineroseris | GARD | Hard coral |
| Goniastrea | GNIA | Hard coral |
| Goniopora | GONI | Hard coral |
| Herpolitha | HERP | Hard coral |
| Hydnophora | HYDN | Hard coral |
| Isopora | ISOP | Hard coral |
| Lobophyllia | LOBO | Hard coral |
| Leptoria | LORI | Hard coral |
| Leptastrea | LPTA | Hard coral |
| Leptoseris | LPTO | Hard coral |
| Montastraea annularis | MA | Hard coral |
| Madracis | MADR | Hard coral |
| Montastraea cavernosa | MC | Hard coral |
| Merulina | MERU | Hard coral |
| Montastraea | MNTA | Hard coral |
| Montipora | MNTI | Hard coral |
| Mycedium | MYCE | Hard coral |
| Old Dead Coral | ODC | Hard coral |
| Oxypora | OXYP | Hard coral |
| Pachyseris | PACH | Hard coral |
| Pavona | PAVO | Hard coral |
| Pectinia | PECT | Hard coral |
| Physogyra | PHYS | Hard coral |
| Platygyra | PLAY | Hard coral |
| Plesiastrea | PLES | Hard coral |
| Pocillopora | POCI | Hard coral |
| Porites (LOF) | PORI | Hard coral |
| Psammocora | PSAM | Hard coral |
| Recent Dead Coral | RDC | Hard coral |
| Sandolitha | SAND | Hard coral |
| Stylocoeniella | SCOE | Hard coral |
| Scolymia | SCOL | Hard coral |
| Seriatopora | SERI | Hard coral |
| Stylophora | STYL | Hard coral |
| Symphyllia | SYMP | Hard coral |
| Turbinaria (coral) | TURB | Hard coral |
| Benthic Invertebrate | BI | Other Invertebrates |
| Diadema (LOF) | DIAD | Other Invertebrates |
| Echinoderms | ECHN | Other Invertebrates |
| Encrusting Sponge (LOF) | ESP | Other Invertebrates |
| Gorgoniidae | G | Other Invertebrates |
| Holothuria | HOLO | Other Invertebrates |
| Leather Coral | LC | Other Invertebrates |
| Millepora | MILLE | Other Invertebrates |
| Palythoa | PALY | Other Invertebrates |
| Soft Coral | SFTC | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Tridacna: Giant clam | TRID | Other Invertebrates |
| Tube or Rod Sponge | TSP | Other Invertebrates |
| Xenia | XE | Other Invertebrates |
| Zoanthid | ZOAN | Other Invertebrates |
| Sand | S | Soft Substrate |
| Sand with Erect CCA (LOF) | S+E | Soft Substrate |
| Sand with Leather Coral (LOF) | S+LC | Soft Substrate |
| Sand with Macroalgae (LOF) | S+M | Soft Substrate |
| Sand with Turf | S+T | Soft Substrate |
| COT Scars | COT | Hard Substrate |
| Dead coral | DC | Hard Substrate |
| Dead Coral (LOF) | DEAD | Hard Substrate |
| Dead Coral with CCA (LOF) | DEAD+CCA | Hard Substrate |
| Dead Coral with Cyanobacteria (LOF) | DEAD+CY | Hard Substrate |
| Dead Coral with Erect CCA (LOF) | DEAD+E | Hard Substrate |
| Dead Coral and Macroalgae (LOF) | DEAD+M | Hard Substrate |
| Dead Coral with Turf (LOF) | DEAD+T | Hard Substrate |
| Dead Coral with Turf Sediment (LOF) | DEAD+TS | Hard Substrate |
| Pavement (LOF) | P | Hard Substrate |
| Pavement with Benthic Invertebrates (LOF) | P+BI | Hard Substrate |
| Pavement and barrel sponge (LOF) | P+BSP | Hard Substrate |
| Pavement an CCA (LOF) | P+CCA | Hard Substrate |
| Pavement and Cyanobacteria (LOF) | P+CY | Hard Substrate |
| Pavement and Erect CCA | P+E | Hard Substrate |
| Pavement and Encrusting Sponge (LOF) | P+ESP | Hard Substrate |
| Pavement with Gorgoneia (LOF) | P+G | Hard Substrate |
| Pavement with Holothurian (LOF) | P+HOLO | Hard Substrate |
| Pavement and Leather Coral (LOF) | P+LC | Hard Substrate |
| Pavement and Macroalgae (LOF) | P+M | Hard Substrate |
| Pavement with Palythoa (LOF) | P+Paly | Hard Substrate |
| Pavement and Soft Coral (LOF) | P+SFTC | Hard Substrate |
| Pavement and Turf (LOF) | P+T | Hard Substrate |
| Pavement with Tridacna (LOF) | P+TRID | Hard Substrate |
| Pavement and Turf Sediment | P+TS | Hard Substrate |
| Pavement and Tube Sponge (LOF) | P+TSP | Hard Substrate |
| Pavement and Xenia (LOF) | P+XE | Hard Substrate |
| Rubble (LOF) | R | Hard Substrate |
| Rubble with CCA (LOF) | R+CCA | Hard Substrate |
| Rubble with Cyanobacteria (LOF) | R+CY | Hard Substrate |
| Rubble with Macroalgae (LOF) | R+M | Hard Substrate |
| Rubble with Turf and Sediment | R+TS | Hard Substrate |
| Sand and Cyanobacteria (LOF) | S+CY | Hard Substrate |
| Sand And Turf (LOF) | S+TS | Hard Substrate |
| Dead coral with algae | DCA | Other |
| Fused Rubble | FR | Other |
| Other | O | Other |
| Recently Dead (LOF) | RDead | Other |
| Shadow | SHAD | Other |
| Rubble | SOFT_RUBB | Other |
| Substrate | SUB | Other |
| TAPE | TAPE | Other |
| Unknown | UNK | Other |
| Wand | WAND | Other |
| Calcareous algae | CALG | Algae |
| Turf on rubble | R+T | Algae |
| Turf (LOF) | T | Algae |