| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AAGA | Hard coral |
| Agaricia grahamae | AGRA | Hard coral |
| Agaricia humilis | AHUM | Hard coral |
| Agaricia lamarcki | ALAM | Hard coral |
| Acropora palmata | APAL | Hard coral |
| Colpophyllia natans | CNAT | Hard coral |
| Diploria labyrinthiformis | DLAB | Hard coral |
| Bleached Diploria labyrinthiformes | DLAB BL | Hard coral |
| Dichocoenia stokesi | DSTO | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FFRA | Hard coral |
| Helioseris cucullata | HCUC | Hard coral |
| Manicina areolata | MARE | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Madracis decactis | MDEC | Hard coral |
| Meandrina meandrites | MMEA | Hard coral |
| Madracis mirabilis | MMIR | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Orbicella franksi | OFRA | Hard coral |
| Orbicella | ORBI | Hard coral |
| Bleached Orbicella | ORBI BL | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Pseudodiploria clivosa | PCLIV | Hard coral |
| Porites | PORI | Hard coral |
| Porites porites | PPOR | Hard coral |
| Pseudodiploria bleached | PSEU BL | Hard coral |
| Pseudodiploria | PSEUDODIP | Hard coral |
| Pseudodiploria strigosa | PSTR | Hard coral |
| Bleached Siderastrea | SIDE BL | Hard coral |
| Stephanocoenia intersepta | SINT | Hard coral |
| Siderastrea radians | SRAD | Hard coral |
| Stylaster roseus | SROS | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Branching Gorgonian | BrGorg | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Eunicea spp. | EUNSPP | Other Invertebrates |
| Gorgonia spp. | GORG SPP | Other Invertebrates |
| Gorgonia ventalina | GVEN | Other Invertebrates |
| Iotrochota | IOT | Other Invertebrates |
| Ircinia sp. | IRCINIA | Other Invertebrates |
| Millepora alcicornis | MALC | Other Invertebrates |
| Millepora complanata | MCOM | Other Invertebrates |
| Millepora | MILL | Other Invertebrates |
| Millepora squarrosa | MSQU | Other Invertebrates |
| Mat tunicate | MTUN | Other Invertebrates |
| Palythoa caribaeorum | PCAR | Other Invertebrates |
| Plexaura spp. | PLESPP | Other Invertebrates |
| Plexaurella spp. | PLEXSPP | Other Invertebrates |
| Pseudoplexaura spp. | PSESPP | Other Invertebrates |
| Pseudopterogorgia | Pseudopter | Other Invertebrates |
| Pterogorgia | Pterogorg | Other Invertebrates |
| Rope sponge | ROSP | Other Invertebrates |
| Sponge: Cliona | SINV_SPO_C | Other Invertebrates |
| Sponges: Branching, Rope Forms | SINV_SPO_E | Other Invertebrates |
| Sponges: Vase | SINV_SPO_V | Other Invertebrates |
| Sponges: Massive forms: Barrels | SMB | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Sponge: Encrusting | SpongeCRUS | Other Invertebrates |
| Sponge: Tubular | SpongeTUBO | Other Invertebrates |
| Tube or Rod Sponge | SPTU | Other Invertebrates |
| Vase sponge | SPvase | Other Invertebrates |
| Tunicate | Tunicate | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Rock Turf Algae | RCTA | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Caulerpa | Caulerpa | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dictyota | Algae |
| Halimeda | Halimeda | Algae |
| Macroalgae | MA | Algae |
| Peyssonnelia | Peysson | Algae |
| Turf algae | TA | Algae |