| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Acropora prolifera | AcrPro | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia/Undaria | AGAR | Hard coral |
| Agaricia grahamae | AgGra | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Bleached Porites | B_Porit | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Diseased Coral | DISCORAL | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FaviaFrag | Hard coral |
| Isophyllia sinuosa | IsophSin | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis auretenra | MadAure | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Meandrina jacksoni | MEANJ | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycetophyllia aliciae | MycetAli | Hard coral |
| Mycetophyllia ferox | MycetFer | Hard coral |
| Mycetophyllia lamarckana | MycetLam | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites divaricata | PorDiv | Hard coral |
| Porites furcata | PorFurc | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria clivosa | PseuCliv | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Scolymia cubensis | SCOCUB | Hard coral |
| Scolymia lacera | SCOLA | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Solenastrea hyades | SOL | Hard coral |
| Solenastrea bournoni | SOLBOU | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Tubastrea aurea | TUBAU | Hard coral |
| Branching Gorgonian | BrGorg | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Erythropodium caribaeorum | ERYCAR | Other Invertebrates |
| Gorgoniidae | GORGONII | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Palythoa | PALYTHO | Other Invertebrates |
| Sponges: Branching, Rope Forms | SINV_SPO_E | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Sponge (arborescent) | SP_arbor | Other Invertebrates |
| Sponge (massive) | SP_mass | Other Invertebrates |
| Trididemnum solidum | TSOL | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Sediment | Sediment | Soft Substrate |
| Pavement | Pavement | Hard Substrate |
| Cyanobacteria | CYANOB | Other |
| Amphiroa sp. | Amphi | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dictyota | Algae |
| Halimeda | Halimeda | Algae |
| Liagora | LIA | Algae |
| Lobophora | Lobophora | Algae |
| Macroalgae | MAL | Algae |
| Padina | Padina | Algae |
| Peyssonnelia | Peysson | Algae |
| Sargassum | Sargassum | Algae |
| Stypopodium sp. | Styp | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf | Algae |
| Turf on rubble | Turf_rubbl | Algae |
| Turf and sand | Turf_sand | Algae |
| Halophila stipulacea | HalophStip | Seagrass |