| Name | Short Code | Functional Group |
|---|---|---|
| Acropora (bushy) | ABUS | Hard coral |
| Acropora (corymbose) | ACOR | Hard coral |
| Bleached Acropora corymbose | ACOR-BL | Hard coral |
| Acanthastrea | ACSP | Hard coral |
| Bleached Acanthastrea | ACSP-BL | Hard coral |
| Acropora (digitate) | ADIG | Hard coral |
| Bleached Acropora Digitate | ADIG-BL | Hard coral |
| Acropora humilis | AHUM | Hard coral |
| Acropora muricata | AMUR | Hard coral |
| Acropora muricata bleached | AMUR-BL | Hard coral |
| Acropora cf. pulchra | APUL | Hard coral |
| Acropora cf. pulchra (bleached) | APUL-BL | Hard coral |
| Bleached Acropora | ASPE-BL | Hard coral |
| Corals: Stony corals: Staghorn | ASTA | Hard coral |
| Bleached Acropora branching | ASTA-BL | Hard coral |
| Astrea | ATSP | Hard coral |
| Other hard coral | CORA | Hard coral |
| Bleached Other Corals | CORA-BL | Hard coral |
| Cyphastrea | CSPE | Hard coral |
| Bleached Cyphastrea | CSPE-BL | Hard coral |
| Ctenactis | CTSP | Hard coral |
| Cycloseris | CYSP | Hard coral |
| Diploastrea heliopora | DPHE | Hard coral |
| Bleached Diploastrea | DPHE-BL | Hard coral |
| Dipsastraea | DPSP | Hard coral |
| Bleached Dipsastraea | DPSP-BL | Hard coral |
| Favites | FAVS | Hard coral |
| Bleached Favites | FAVS-BL | Hard coral |
| Fungia | FUSP | Hard coral |
| Bleached Fungia | FUSP-BL | Hard coral |
| Galaxea fascicularis | GFAS | Hard coral |
| Bleached Galaxea | GFAS-BL | Hard coral |
| Goniastrea | GNSP | Hard coral |
| Goniopora | GPSP | Hard coral |
| Bleached Goniopora | GPSP-BL | Hard coral |
| Goniastrea edwardsi_retiformis | GRET | Hard coral |
| Bleached Goniastrea | GRET-BL | Hard coral |
| Goniastrea stelligera | GSTE | Hard coral |
| Bleaching Goniastrea stelligera | GSTE-BL | Hard coral |
| Herpolitha | HESP | Hard coral |
| Bleaching Herpolitha | HESP-BL | Hard coral |
| Hydnophora microconos | HMIC | Hard coral |
| Bleaching Hydnophora | HMIC-BL | Hard coral |
| Leptastrea | LESP | Hard coral |
| Bleaching Leptastrea | LESP-BL | Hard coral |
| Leptoria | LPHR | Hard coral |
| Bleached Leptoria | LPHR-BL | Hard coral |
| Leptastrea purpurea | LPUR | Hard coral |
| Leptastrea purpurea bleached | LPUR-BL | Hard coral |
| Montipora | MONS | Hard coral |
| Bleached Montipora | MONS-BL | Hard coral |
| Montipora verrucosa | MVER | Hard coral |
| Porites annae | PANN | Hard coral |
| Pavona cactus | PCAC | Hard coral |
| Porites cylindrica | PCYL | Hard coral |
| Bleached Porites cylindrica | PCYL-BL | Hard coral |
| Platygyra daedalea | PDAE | Hard coral |
| Bleached Platygyra | PDAE-BL | Hard coral |
| Pocillopora damicornis | PDAM | Hard coral |
| Bleached Pocillopora damicornis | PDAM-BL | Hard coral |
| Pavona decussata | PDEC | Hard coral |
| Bleached Pavona decussata | PDEC-BL | Hard coral |
| Pavona decussata_divaricata_frondifera | PDIV | Hard coral |
| Psammocora profundacella | PFRO | Hard coral |
| Plesiastrea versipora | PLVE | Hard coral |
| Porites (massive) | PMAS | Hard coral |
| Bleached Porites (massive) | PMAS-BL | Hard coral |
| Pocillopora | POSP | Hard coral |
| Bleached Pocillopora | POSP-BL | Hard coral |
| Porites rus | PRUS | Hard coral |
| Porites rus bleached | PRUS-BL | Hard coral |
| Psammocora contigua | PSCO | Hard coral |
| Bleached Psammocora | PSCO-BL | Hard coral |
| Pavona varians | PVAR | Hard coral |
| Bleached Pavona varians | PVAR-BL | Hard coral |
| Pavona venosa | PVEN | Hard coral |
| Pavona | PVSP | Hard coral |
| Bleached Pavona | PVSP-BL | Hard coral |
| Recent Dead Coral | REKI | Hard coral |
| Recently dead closed Acropora | REST | Hard coral |
| Anemone | Anemone | Other Invertebrates |
| The crown-of-thorns sea star, Acanthaster pl | APLA | Other Invertebrates |
| Asteroidea | ASTE | Other Invertebrates |
| Culcita novaeguineae | CNOV | Other Invertebrates |
| Dysidea sp | DYSI | Other Invertebrates |
| Echinoderms | ECHN | Other Invertebrates |
| Heliopora coerulea | HCOE | Other Invertebrates |
| Holothuria | HOLO | Other Invertebrates |
| Other invertebrate | INVE | Other Invertebrates |
| Linckia laevigata | LILA | Other Invertebrates |
| Linckia multiflora | LMUL | Other Invertebrates |
| Millepora | MISP | Other Invertebrates |
| Palythoa | PALY | Other Invertebrates |
| Sabellidae | SABE | Other Invertebrates |
| Sinularia | SINU | Other Invertebrates |
| Bleaching Sinularia | SINU-BL | Other Invertebrates |
| Other Soft Corals | SOFT | Other Invertebrates |
| Sponge | SPOG | Other Invertebrates |
| Sponges: Terpios | TERP | Other Invertebrates |
| Tridacna maxima | TRID | Other Invertebrates |
| Tunicate | TUNI | Other Invertebrates |
| Echinoderms: sea urchin | URCH | Other Invertebrates |
| Vermetidae | VERM | Other Invertebrates |
| Worms: Polychaetes: Tube worms | WORM | Other Invertebrates |
| Sand | SAND | Soft Substrate |
| Dead coral | DEAD | Hard Substrate |
| Dead staghorn Acropora | DEST | Hard Substrate |
| Cyanobacteria | CYAN | Other |
| Fish | FISH | Other |
| Trash | GARB | Other |
| Unknown | NOID | Other |
| Other | OTHR | Other |
| Rubble | RUBB | Other |
| Sand / Rubble | SARU | Other |
| Transect Tape | TAPE | Other |
| Amphiroa sp. | AMPH | Algae |
| Boodlea | BOOD | Algae |
| Red algae - branching | BRCA | Algae |
| Caulerpa racemosa | CARA | Algae |
| Caulerpa serrulata | CASE | Algae |
| Caulerpa sertularioides | CAST | Algae |
| Caulerpa taxifolia or similar | CATA | Algae |
| Caulerpa spp. | CAUL | Algae |
| Chrysocystis fragilis | CHFR | Algae |
| CCA (crustose coralline algae) | CRCA | Algae |
| Dictyota | DICT | Algae |
| Halimeda | HALI | Algae |
| Halimeda macroloba | HAMA | Algae |
| Macroalgae | MALG | Algae |
| Neomeris | NESP | Algae |
| Padina | PADN | Algae |
| Sargassum | SARG | Algae |
| Turbinaria (algae) | TURB | Algae |
| Tydemania expeditionis | TYDE | Algae |
| Valonia spp. | VALO | Algae |