| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Sponges: Branching, Rope Forms | Branch_Spo | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Erythropodium caribaeorum | EriCaribb | Other Invertebrates |
| Sponge: globular | Glob_SPong | Other Invertebrates |
| Gorgoniidae | Gorgonia | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Sponge: Tubular | Tub_Sponge | Other Invertebrates |
| Sponges: Vase | Vase_Spone | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| sediment (fine) | sed_fine | Soft Substrate |
| Cave - Medium | CaveM | Hard Substrate |
| Cave - Small | CaveS | Hard Substrate |
| Pavement | Pavement | Hard Substrate |
| Rubble | Rubble | Other |
| CRED-Brown macroalgae | Brown_alga | Algae |
| Dictyota | Dictyota | Algae |
| Galaxaura | Galaxaura | Algae |
| CRED-Green macroalgae | Green_alga | Algae |
| Halimeda | Halimeda | Algae |
| Jania | Jania | Algae |
| Padina | Padina | Algae |
| CRED-Red macroalgae | Red_alga | Algae |
| Turbinaria (algae) | Turbinaria | Algae |
| Turf algae | Turf | Algae |
| Syringodium filiforme | ManateeGra | Seagrass |
| Thalassia testudinum | TurtleGras | Seagrass |