| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | ACAN | Hard coral |
| Acropora | ACRO | Hard coral |
| Alveopora | ALVE | Hard coral |
| Astreopora | ASTR | Hard coral |
| Barabottia | BARA | Hard coral |
| Blastomussa | BLAS | Hard coral |
| Caulastrea | CAUL | Hard coral |
| Diseased Coral | CD | Hard coral |
| Coscinaraea | COSC | Hard coral |
| Ctenactis | CTEN | Hard coral |
| Cyphastrea | CYPH | Hard coral |
| Diploastrea | DIPL | Hard coral |
| Echinopora | ENOP | Hard coral |
| Euphyllia | EUPH | Hard coral |
| Fungia | FUNG | Hard coral |
| Favia | FVIA | Hard coral |
| Favites | FVIT | Hard coral |
| Galaxea | GALA | Hard coral |
| Gardineroseris | GARD | Hard coral |
| Goniastrea | GNIA | Hard coral |
| Goniopora | GONI | Hard coral |
| Herpolitha | HERP | Hard coral |
| Hydnophora | HYDN | Hard coral |
| Isopora | ISOP | Hard coral |
| Lobophyllia | LOBO | Hard coral |
| Leptoria | LORI | Hard coral |
| Leptastrea | LPTA | Hard coral |
| Leptoseris | LPTO | Hard coral |
| Madracis | MADR | Hard coral |
| Merulina | MERU | Hard coral |
| Montastraea | MNTA | Hard coral |
| Montipora | MNTI | Hard coral |
| Mycedium | MYCE | Hard coral |
| Oulophyllia | OULO | Hard coral |
| Oxypora | OXYP | Hard coral |
| Pachyseris | PACH | Hard coral |
| Pavona | PAVO | Hard coral |
| Pectinia | PECT | Hard coral |
| Physogyra | PHYS | Hard coral |
| Platygyra | PLAY | Hard coral |
| Plesiastrea | PLES | Hard coral |
| Pocillopora | POCI | Hard coral |
| Porites | PORI | Hard coral |
| Psammocora | PSAM | Hard coral |
| Recently dead coral | RDEAD | Hard coral |
| Sandolitha | SAND | Hard coral |
| Stylocoeniella | SCOE | Hard coral |
| Scolymia | SCOL | Hard coral |
| Seriatopora | SERI | Hard coral |
| Dead with Snail Damage | SN | Hard coral |
| Stylophora | STYL | Hard coral |
| Symphyllia | SYMP | Hard coral |
| Tubastrea | Tub | Hard coral |
| Turbinaria (coral) | TURB | Hard coral |
| Asteroidea | ASTE | Other Invertebrates |
| Barrel Sponge | BSP | Other Invertebrates |
| Crown of Thorns Sea Star | COT | Other Invertebrates |
| Diadema sp | DIAD | Other Invertebrates |
| Echinoderms | ECHN | Other Invertebrates |
| Encrusting sponge | ESP | Other Invertebrates |
| Gorgonian | G | Other Invertebrates |
| Heliopora | HELI | Other Invertebrates |
| Holothuroidea | HOLO | Other Invertebrates |
| Leather Coral | LC | Other Invertebrates |
| Millepora | MILL | Other Invertebrates |
| Palythoa | PALY | Other Invertebrates |
| Soft Coral | SFTC | Other Invertebrates |
| Tridacna | TRID | Other Invertebrates |
| Tube or Rod Sponge | TSP | Other Invertebrates |
| Xenia | XE | Other Invertebrates |
| Zoanthids | Z | Other Invertebrates |
| Sand | S | Soft Substrate |
| Sand with Turf | S+TS | Soft Substrate |
| Dead coral | DEAD | Hard Substrate |
| Dead Coral with CCA (LOF) | Dead+CCA | Hard Substrate |
| Dead Coral with Cyanobacteria (LOF) | DEAD+CY | Hard Substrate |
| Dead Coral with Erect CCA (LOF) | DEAD+E | Hard Substrate |
| DEAD with Echinoderm | DEAD+ECHN | Hard Substrate |
| Dead Coral with Turf (LOF) | DEAD+T | Hard Substrate |
| Dead Coral with Turf Sediment (LOF) | DEAD+TS | Hard Substrate |
| Pavement | P | Hard Substrate |
| Pavement an CCA (LOF) | P+CCA | Hard Substrate |
| Pavement and Cyanobacteria (LOF) | P+CY | Hard Substrate |
| Pavement and Turf (LOF) | P+T | Hard Substrate |
| Pavement and Turf Sediment | P+TS | Hard Substrate |
| Culcita | CUL | Other |
| Cyanobacteria | CY | Other |
| DEAD with Remnants | DEAD+REM | Other |
| Dead with Tridacna | DEAD+TRID | Other |
| Fused Rubble | FR | Other |
| fused rubble with remnants | FR+REM | Other |
| Fused rubble with turf sediment | FR+TS | Other |
| Pavement with Echinoderm | P+ECHN | Other |
| Pavement with Remnants | P+REM | Other |
| Rubble | R | Other |
| Remnants | REM | Other |
| Rubble with Remnants | R+REM | Other |
| Shadow | SHAD | Other |
| shadow with turf | SHAD+T | Other |
| Shadow with turf sediment | SHAD+TS | Other |
| Sand with Remnants | S+REM | Other |
| TAPE | TAPE | Other |
| Wand | WAND | Other |
| CCA (crustose coralline algae) | CCA | Algae |
| Dead with Macroalgae | DEAD+M | Algae |
| Macroalgae | M | Algae |
| Turf with sediment on rubble | R+TS | Algae |
| Turf algae | T | Algae |
| Turf with sediment | TS | Algae |