| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | ACAN | Hard coral |
| Acropora | ACROP | Hard coral |
| Alveopora | ALVEO | Hard coral |
| Anacropora | ANAC | Hard coral |
| Astreopora | ASTRP | Hard coral |
| Bleached Hard Coral | BC | Hard coral |
| Caulastrea | CAUL | Hard coral |
| Coscinaraea | COSC | Hard coral |
| Ctenactis | CTEN | Hard coral |
| Cyphastrea | CYPH | Hard coral |
| CRED-Diploastrea spp | DIPLO | Hard coral |
| Echinophyllia | ECHPHY | Hard coral |
| Echinopora | ECHPO | Hard coral |
| Euphyllia | EUPH | Hard coral |
| Favia | FAV | Hard coral |
| Favites | FAVT | Hard coral |
| Fungia | FUNG | Hard coral |
| Galaxea | GAL | Hard coral |
| Gardineroseris | GARD | Hard coral |
| Goniastrea | GON | Hard coral |
| Goniopora | GONIO | Hard coral |
| Herpolitha | HERP | Hard coral |
| Hydnophora | HYD | Hard coral |
| Isopora | ISOP | Hard coral |
| Leptastrea | LEPT | Hard coral |
| Leptoria | LEPTOR | Hard coral |
| Leptoseris | LEPTOS | Hard coral |
| Lobophyllia | LOBOPH | Hard coral |
| Merulina | MERU | Hard coral |
| Montastraea | MONT | Hard coral |
| Montipora | MONTI | Hard coral |
| Mycedium | MYCED | Hard coral |
| Oulophyllia | OULO | Hard coral |
| Oxypora | OXYP | Hard coral |
| Pachyseris | PACHY | Hard coral |
| Pavona | PAV | Hard coral |
| Pectinia | PECT | Hard coral |
| Physogyra | PHYSO | Hard coral |
| Platygyra | PLAT | Hard coral |
| Plerogyra | PLERO | Hard coral |
| Plesiastrea | PLSIA | Hard coral |
| Pocillopora | POC | Hard coral |
| Pocillopora damicornis | POCDA | Hard coral |
| Porites | POR | Hard coral |
| Porites (massive) | PORMAS | Hard coral |
| Porites rus | PORRUS | Hard coral |
| Psammocora | PSAM | Hard coral |
| Sandalolitha | SANDO | Hard coral |
| Scapophyllia | SCAP | Hard coral |
| Seriatopora | SERIA | Hard coral |
| Acropora spp._staghorn | STAGG | Hard coral |
| Stylocoeniella | STYLC | Hard coral |
| Stylophora | STYLO | Hard coral |
| Symphyllia | SYMP | Hard coral |
| Turbinaria (coral) | TURB | Hard coral |
| Anemone | ANEM | Other Invertebrates |
| Ascidian | ASC | Other Invertebrates |
| Asterospicularia_clustered | ASTEROS | Other Invertebrates |
| Sponges: Hollow forms : Cups and alikes | CUPS | Other Invertebrates |
| Discosoma | DISCO | Other Invertebrates |
| Dysidea sp | DYS | Other Invertebrates |
| Gorgonia spp. | G | Other Invertebrates |
| Heliopora | HELIO | Other Invertebrates |
| Millepora | MILL | Other Invertebrates |
| Olive Sponge | OLV | Other Invertebrates |
| Sponges | S | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sponges: Terpios | TERPS | Other Invertebrates |
| Zoanthids | Z | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Brown Chrysophyte | CHRYOBRN | Other |
| Unknown Invert | NoIDINV | Other |
| Schizothrix | SCHIZ | Other |
| Shadow | Shadow | Other |
| TAPE | Tape | Other |
| Wand | Wand | Other |
| Amphiroa sp. | AMP | Algae |
| Asparagopsis | ASP | Algae |
| Branching Coralline Algae | BCA1 | Algae |
| Bluegreen algae | BG | Algae |
| Boodlea | Bood | Algae |
| Bryopsis spp. | BRYP | Algae |
| CCA (crustose coralline algae) | CCA1 | Algae |
| Chlorodesmis sp. | CHLDES | Algae |
| Caulerpa | CLP | Algae |
| Dictyota | DICT | Algae |
| Dictyosphaerea | DYCTY | Algae |
| Fleshy Calcified Algae | FCA1 | Algae |
| Damsel turf | FFT | Algae |
| Galaxaura | GLXU | Algae |
| Halimeda | HALI | Algae |
| Jania | JAN | Algae |
| Liagora | LIAG | Algae |
| Lobophora | LOBO | Algae |
| Mastophora | MAST | Algae |
| Microdictyon | MICDTY | Algae |
| Neomeris | NEOM | Algae |
| Unknown macroalgae | NOIDMAC | Algae |
| Padina | PAD | Algae |
| Sargassum | SARG | Algae |
| Turbinaria (algae) | TURBIN | Algae |
| Turf algae | TURF | Algae |
| Tydemania spp. | TYDM | Algae |