| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AA | Hard coral |
| Acropora cervicornis | AC | Hard coral |
| Agaricia fragilis | AF | Hard coral |
| Agaricia grahamae | AG | Hard coral |
| Agaricia lamarcki | AL | Hard coral |
| Acropora palmata | AP | Hard coral |
| Acropora prolifera | APR | Hard coral |
| Agaricia tenuifolia | AT | Hard coral |
| Agaricia undata | AU | Hard coral |
| Coral | CCC | Hard coral |
| Colpophyllia natans | CN | Hard coral |
| Dendrogyra cylindrus | DCY | Hard coral |
| Diploria labyrinthiformis | DL | Hard coral |
| Dichocoenia stokesi | DSO | Hard coral |
| Dichocoenia stellaris | DST | Hard coral |
| Eusmilia fastigiata | EF | Hard coral |
| Favia fragum | FF | Hard coral |
| Isophyllia sinuosa | IS | Hard coral |
| Leptoseris cucullata | LC | Hard coral |
| Mycetophyllia aliciae | MAL | Hard coral |
| Mussa angulosa | MAN | Hard coral |
| Manicina areolata | MAR | Hard coral |
| Montastraea cavernosa | MC | Hard coral |
| Madracis decactis | MD | Hard coral |
| Mycetophyllia danaana | MDA | Hard coral |
| Mycetophyllia ferox | MF | Hard coral |
| Mycetophyllia lamarckiana | ML | Hard coral |
| Madracis mirabilis | MM | Hard coral |
| Meandrina meandrites | MME | Hard coral |
| Unidentified Hard Coral | MSCC | Hard coral |
| Orbicella annularis | OA | Hard coral |
| Oculina diffusa | OD | Hard coral |
| Orbicella faveolata | OFA | Hard coral |
| Orbicella franksi | OFR | Hard coral |
| Porites astreoides | PA | Hard coral |
| Porites branneri | PB | Hard coral |
| Pseudodiploria strigosa | PDS | Hard coral |
| Porites furcata | PF | Hard coral |
| Porites porites | PP | Hard coral |
| Solenastrea bournoni | SB | Hard coral |
| Scolymia cubensis | SC | Hard coral |
| Solenastrea hyades | SH | Hard coral |
| Stephanocoenia intersepta | SI | Hard coral |
| Scolymia lacera | SL | Hard coral |
| Siderastrea radians | SR | Hard coral |
| Siderastrea siderea | SS | Hard coral |
| Tubastraea aurea | TA | Hard coral |
| Ascidiacea | ASC | Other Invertebrates |
| Bivalve | BIV | Other Invertebrates |
| invertebrate | INV | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Millepora squarrosa | MILS | Other Invertebrates |
| Palythoa sp. | PAL | Other Invertebrates |
| Soft Coral | SOC | Other Invertebrates |
| Sponge | SPO | Other Invertebrates |
| Zoanthid | ZO | Other Invertebrates |
| Sand | S | Soft Substrate |
| Pavement | P | Hard Substrate |
| Cyanobacteria | CB | Other |
| Dead coral with algae | DCA | Other |
| Fish | FIS | Other |
| Rubble | R | Other |
| Shadow | SHAW | Other |
| TAPE | TAPE | Other |
| turf | TURF | Other |
| Unknown | UNK | Other |
| Coralline algae | CA | Algae |
| Dictyota | DICT | Algae |
| Halimeda | HAL | Algae |
| Lobophora | LOBO | Algae |
| Macroalgae | MAC | Algae |
| Miscellaneous algae | MISA | Algae |
| Padina | PAD | Algae |
| Sargassum | SARG | Algae |
| Turbinaria (algae) | TURB | Algae |
| Wrangelia | WRAN | Algae |