| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Agaricia spp. | AG | Hard coral |
| Porites (branching) | BRA_Por | Hard coral |
| Dichocoenia stokesi | CIST | Hard coral |
| Colpophyllia natans | CON | Hard coral |
| Diploria labyrinthiformis | DL | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Madracis | MADR | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Millepora spp. | Mil_spp | Hard coral |
| Mycetophyllia | MYCE | Hard coral |
| Orbicella | Orb | Hard coral |
| Palythoa sp | Paly | Hard coral |
| Porites-mound | POR-M | Hard coral |
| Pseudodiploria | PSEU | Hard coral |
| Siderastrea | SID | Hard coral |
| Solenastrea | SOLE | Hard coral |
| Aiolochroia crassa | Acra | Other Invertebrates |
| Amphimedon spp. | Amp_spp | Other Invertebrates |
| Agelas | A.O | Other Invertebrates |
| Aplysina spp. | AP sp | Other Invertebrates |
| Briareum asbestinum | BRIASB | Other Invertebrates |
| Callyspongia spp. | Cal_spp | Other Invertebrates |
| Cinachyrella sp. | cinac | Other Invertebrates |
| Cliona spp. | CLION | Other Invertebrates |
| Cribrochalina sp | Crib | Other Invertebrates |
| Ectyoplasia | Ect | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Eunicea spp. | EUNSPP | Other Invertebrates |
| Geodia sp. | Geod | Other Invertebrates |
| Gorgonia spp. | GORSPP | Other Invertebrates |
| Iotrochota | IOT | Other Invertebrates |
| Ircinia sp. | IRCINIA | Other Invertebrates |
| Mat tunicate | MTUN | Other Invertebrates |
| Mycale spp. | MYCA | Other Invertebrates |
| Niphates sp | Niph | Other Invertebrates |
| Pseudopterogorgia | PGor | Other Invertebrates |
| Verongula sp. | Ver | Other Invertebrates |
| Xestospongia | XES | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Dead coral | Dead | Hard Substrate |
| Hardpan | H | Hard Substrate |
| Rock_Pavement | RckPav | Hard Substrate |
| Cyanobacteria | CYAN. | Other |
| Fish | FISH | Other |
| Measuring Stick | Meas | Other |
| Rubble | RUBB | Other |
| Shadow | SHAD | Other |
| Tape Measure | TM | Other |
| Amphiroa sp. | Amphi | Algae |
| Caulerpa | Caul | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Chrysophyta | CHRY | Algae |
| Dichothrix sp. | Dich | Algae |
| Dictyota | Dicsp | Algae |
| Galaxaura | GALA | Algae |
| Halimeda spp. | Hal_spp | Algae |
| Jania | JANI | Algae |
| Lobophora spp. | Lob_spp | Algae |
| Microdictyon spp. | MICR | Algae |
| Padina spp. | Pad_spp | Algae |
| Penicillus spp. | PENCIL | Algae |
| Stypopodium spp. | STYP. | Algae |
| Turf algae | Turf_algae | Algae |
| Unknown Algae | UA | Algae |
| Wrangelia | WRA | Algae |