| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AAGA | Hard coral |
| Acropora cervicornis | ACER | Hard coral |
| Agaricia fragilis | AFRA | Hard coral |
| Agaricia | AGAR | Hard coral |
| Agaricia grahamae | AGRA | Hard coral |
| Agaricia humilis | AHUM | Hard coral |
| Agaricia lamarcki | ALAM | Hard coral |
| Acropora palmata | APAL | Hard coral |
| Acropora prolifera | APRO | Hard coral |
| Agaricia tenuifolia | ATEN | Hard coral |
| Agaricia undata | AUND | Hard coral |
| Colpophyllia breviserialis | CBRE | Hard coral |
| Colpophyllia natans | CNAt | Hard coral |
| Coral | Coral | Hard coral |
| Dendrogyra cylindrus | DCYL | Hard coral |
| Diploria labyrinthiformis | DLAB | Hard coral |
| Dichocoenia stellaris | DSTE | Hard coral |
| Dichocoenia stokesi | DSTO | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FFRA | Hard coral |
| Stylaster roseus | Fire Sros | Hard coral |
| Helioseris cucullata | HCUC | Hard coral |
| Isophyllia sinuosa | ISIN | Hard coral |
| Leptoseris cailleti | LCAI | Hard coral |
| Mycetophyllia aliciae | MALI | Hard coral |
| Mussa angulosa | MANG | Hard coral |
| Manicina areolata | MARE | Hard coral |
| Madracis auretenra | MAUR | Hard coral |
| Madracis carmabi | MCAR | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Mycetophyllia danaana | MDAN | Hard coral |
| Madracis decacitis | MDEC | Hard coral |
| Mycetophyllia ferox | MFER | Hard coral |
| Madracis formosa | MFOR | Hard coral |
| Mycetophyllia lamarckana | MLAM | Hard coral |
| Meandrina meandrites | MMEA | Hard coral |
| Madracis senaria | MSEN | Hard coral |
| Mycetophyllia | MYCE | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Oculina diffusa | ODIF | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Orbicella franksi | OFRA | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Porites branneri | PBRA | Hard coral |
| Pseudodiploria clivosa | PCLI | Hard coral |
| Porites divaricata | PDIV | Hard coral |
| Porites furcata | PFUR | Hard coral |
| Porites porites | PPOR | Hard coral |
| Pseudodiploria strigosa | PSTRI | Hard coral |
| Solenastrea bournoni | SBOU | Hard coral |
| Scolymia cubensis | SCUB | Hard coral |
| Solenastrea hyades | SHYA | Hard coral |
| Stephanocoenia intersepta | SINT | Hard coral |
| Scolymia lacera | SLAC | Hard coral |
| Stephanocoenia michellini | SMIC | Hard coral |
| Siderastrea radians | SRAD | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Ascidian | A | Other Invertebrates |
| Pseudopterogorgia | ANTI | Other Invertebrates |
| Briareum | BRIA | Other Invertebrates |
| Chondrilla spp. | CHON | Other Invertebrates |
| Clionid spp. | CLIONI | Other Invertebrates |
| Erythropodium caribaeorum | ECAR | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Eunicea spp. | EUNI | Other Invertebrates |
| Gorgoniidae | GORGO | Other Invertebrates |
| Gorgonia spp. | GVEN | Other Invertebrates |
| Hydrozoa | HYDRO | Other Invertebrates |
| Iciligorgia spp. | ICIL | Other Invertebrates |
| Millepora alcicornis | MALC | Other Invertebrates |
| Millepora complanata | MCOM | Other Invertebrates |
| Millepora | Mille | Other Invertebrates |
| Millepora squarrosa | MSQUA | Other Invertebrates |
| Muricea spp. | MURI | Other Invertebrates |
| Muriceopsis spp. | MURO | Other Invertebrates |
| Other invertebrate | Other Inv | Other Invertebrates |
| Palythoa | PALY | Other Invertebrates |
| Plexaurella spp. | PLEL | Other Invertebrates |
| Plexaura spp. | PLEX | Other Invertebrates |
| Pseudoplexaura spp. | PSEUGORG | Other Invertebrates |
| Pterogorgia | PTER | Other Invertebrates |
| Sponge Other | SpgOth | Other Invertebrates |
| Sponges: Massive forms: Barrels | SPONGB | Other Invertebrates |
| Sponges: Branching, Rope Forms | SPONGR | Other Invertebrates |
| Sponges: Vase | SPONGV | Other Invertebrates |
| Tube or Rod Sponge | SPTU | Other Invertebrates |
| Trididemnum spp. | TRIDI | Other Invertebrates |
| Zoanthid | ZOAN | Other Invertebrates |
| Loose Substrate: Rubble | LSUB_RUB | Soft Substrate |
| Sand | Sand | Soft Substrate |
| Limestone free of overgrowth | LIME | Hard Substrate |
| Cyanobacteria films | CYAN | Other |
| Schizothrix | Cyan red | Other |
| Shadow | SHAD | Other |
| TAPE | TAPE | Other |
| Unknown | Unk | Other |
| Amphiroa sp. | Amphi | Algae |
| Branching and calcareous algae | BRAN-CALC | Algae |
| Crustose coralline algae | CCA 1 | Algae |
| Cyanobacterium sp. | Cya_spe | Algae |
| Dictyota | Dicsp | Algae |
| Halimeda spp. | Hal_spp | Algae |
| Liagora | LIA | Algae |
| Lobophora spp. | Lob_spp | Algae |
| Macroalgae | Macro | Algae |
| Padina | Pad | Algae |
| Padina spp. | Pad_spp | Algae |
| Porolithon | Poro | Algae |
| Sargassum | Sarg | Algae |
| Stypopodium sp. | Styp | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf overgrowing recently dead coral | Turf coral | Algae |
| Thick turf algae | Turf thick | Algae |
| Grazed or thin turf | Turf thin | Algae |
| Wrangelia | WRA | Algae |
| Seagrass | Seagrass | Seagrass |
| Thalassia | THAL | Seagrass |