| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AC | Hard coral |
| Acropora cervicornis - bleached | ACB | Hard coral |
| Acropora palmata | AP | Hard coral |
| Apalmata Bleached | APB | Hard coral |
| Apalmata Old Dead | APD | Hard coral |
| Acropora prolifera | APF | Hard coral |
| Agaricia | ASP | Hard coral |
| Coral Juvenile | CJ | Hard coral |
| Colpophyllia natans | CN | Hard coral |
| Hard coral | CORAL | Hard coral |
| Dendrogyra cylindrus | DC | Hard coral |
| Diploria labyrinthiformis | DL | Hard coral |
| Bleached Diploria labyrinthiformes | DLB | Hard coral |
| Dichocoenia stellaris | DS | Hard coral |
| Dichocoenia stokesi | DSTO | Hard coral |
| Eusmilia fastigiata | EF | Hard coral |
| Favia fragum | FF | Hard coral |
| Leptoseris | LSP | Hard coral |
| Mussa angulosa | MANG | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Montastraea cavernosa - Bleached | MCAVB | Hard coral |
| Madracis decactis | MD | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Mycetophyllia | MYCE | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Fully Bleached Orbicella Annularis | OANNB | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Bleached Orbicella faveolata | OFAVB | Hard coral |
| Orbicella franksi | OFRA | Hard coral |
| Oculina | OSPP | Hard coral |
| Porites astreoides | PA | Hard coral |
| Bleached Porites astreoides | PAB | Hard coral |
| Porites branneri | PB | Hard coral |
| Pseudodiploria clivosa | PC | Hard coral |
| Porites divaricata | PD | Hard coral |
| Porites furcata | PF | Hard coral |
| Porites porites | PP | Hard coral |
| Pseudodiploria strigosa | PS | Hard coral |
| Stephanocoenia intersepta | SI | Hard coral |
| Solenastrea | SOLSP | Hard coral |
| Siderastrea radians | SR | Hard coral |
| Siderastrea siderea | SS | Hard coral |
| Siderastrea siderea - Bleached | SSB | Hard coral |
| Antillogorgia spp. | ANTSPP | Other Invertebrates |
| Sponges: Branching, Rope Forms | BRA | Other Invertebrates |
| Diadema antillarum | Diad | Other Invertebrates |
| Encrusting sponge | ENC | Other Invertebrates |
| Erythropodium | ERY | Other Invertebrates |
| Eunicea spp. | EUN | Other Invertebrates |
| Gorgonia spp. | GORG | Other Invertebrates |
| Dead Gorgonian | GORGD | Other Invertebrates |
| Gorgonia ventalina | GVEN | Other Invertebrates |
| Iciligorgia spp. | ICSP | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Plexaura spp. | PAURA | Other Invertebrates |
| Plexaurella spp. | PLEX | Other Invertebrates |
| Pseudoplexaura spp. | PSDP | Other Invertebrates |
| Pterogorgia | PTER | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Sponges: Hollow forms :Tubes and chimneys | TU | Other Invertebrates |
| Echinoderms: sea urchin | URCH | Other Invertebrates |
| Sponges: Vase | VA | Other Invertebrates |
| Zoanthid | ZO | Other Invertebrates |
| Sand | S | Soft Substrate |
| Acropora cervicornis dead | ACD | Hard Substrate |
| Cyanobacteria | CYN | Other |
| Others | O | Other |
| Rubble | R | Other |
| Shadow | SHAD | Other |
| Wand | WAND | Other |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | DICT | Algae |
| Halimeda | HALSP | Algae |
| Lobophora | LOBO | Algae |
| Peyssonnelia | PAC | Algae |
| Sargassum | SARG | Algae |
| Stypopodium sp. | STYP | Algae |
| Turf algae | T | Algae |
| Halophila stipulacea | HS | Seagrass |