| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia fragilis | AgFra | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Bleached Hard Coral | B_HC | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FaviaFrag | Hard coral |
| Fully Bleached Agaricia agricites | FBAA | Hard coral |
| Fully Bleached Diploria labyrinthiformis | FBDL | Hard coral |
| Fully Bleached Orbicella Annularis | FBOA | Hard coral |
| Fully Bleached Orbicella faveolata | FBOF | Hard coral |
| Helioseris cucullata | HeCuc | Hard coral |
| Madracis auretenra | MadAure | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Mycetophyllia ferox | MycetFer | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Partially Bleached Coral | ParBl | Hard coral |
| Partially Bleached Agaricia agricites | PBAA | Hard coral |
| Partially Bleached Diploria labyrinthiformis | PBDL | Hard coral |
| Partially Bleached Orbicella Annularis | PBOA | Hard coral |
| Partially Bleached Orbicella faveolata | PBOF | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria clivosa | PseuCliv | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Recent Dead Coral | RD_HC | Hard coral |
| Scolymia | SCOL | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Solenastrea bournoni | SOLBOU | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Boring sponge | BORS | Other Invertebrates |
| Condylactis gigantea | CONGI | Other Invertebrates |
| Encrusting gorgonian | ENGR1 | Other Invertebrates |
| Erythropodium caribaeorum | ERYCAR | Other Invertebrates |
| Gorgonia spp. | GORSPP | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Palythoa | PALYTHO | Other Invertebrates |
| Plexaurella spp. | PLEXSPP | Other Invertebrates |
| Pseudoplexaura spp. | PSESPP | Other Invertebrates |
| Pseudopterogorgia | Pseudopter | Other Invertebrates |
| Pterogorgia | Pterogorg | Other Invertebrates |
| Soft Coral plumes | SCplu | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Trididemum solidum. | TRID | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Bare Substrate | Bare-Subst | Hard Substrate |
| Dead coral | D_coral | Hard Substrate |
| Cyanobacteria | CYANOB | Other |
| Fish | FISH | Other |
| Rubble | Rubble | Other |
| TAPE | TAPE | Other |
| Tape_TWS | taptws | Other |
| Unclear | Unc | Other |
| Unknown | Unk | Other |
| Benthic Microalgae on Sand | BMA_sand | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dictyota | Algae |
| Lobophora | Lobophora | Algae |
| Macroalgae | MAL | Algae |
| Sargassum | Sargassum | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf | Algae |
| Halophila stipulacea | HalophStip | Seagrass |
| Thalassia testudinum | ThalTes | Seagrass |