| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AAGA | Hard coral |
| Acropora cervicornis | ACER | Hard coral |
| Agaricia fragilis | AFRA | Hard coral |
| Agaricia | AGASPP | Hard coral |
| Agaricia humilis | AHUM | Hard coral |
| Agaricia lamarcki | ALAM | Hard coral |
| Acropora palmata | APALM | Hard coral |
| Agaricia tenuifolia | ATEN | Hard coral |
| Cirrhipathes sp. | CIRR | Hard coral |
| Colpophyllia natans | CNAT | Hard coral |
| Dendrogyra cylindrus | DCYL | Hard coral |
| Diploria labyrinthiformis | DLAB | Hard coral |
| Dichocoenia stokesi | DSTO | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FFRA | Hard coral |
| Helioseris cucullata | HCUC | Hard coral |
| Madracis | MADSPP | Hard coral |
| Mussa angulosa | MANG | Hard coral |
| Manicina areolata | MARE | Hard coral |
| Madracis auretenra | MAUR | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Madracis decactis | MDEC | Hard coral |
| Mycetophyllia ferox | MFER | Hard coral |
| Meandrina meandrites | MMEA | Hard coral |
| Mycetophyllia | MYCSPP | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Orbicella franksi | OFRA | Hard coral |
| Orbicella | ORBSPP | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Pseudodiploria clivosa | PCLIV | Hard coral |
| Porites porites | PPOR | Hard coral |
| Recent Dead Coral | RD_HC | Hard coral |
| Solenastrea bournoni | SBOU | Hard coral |
| Scolymia | SCOL | Hard coral |
| Stephanocoenia intersepta | SINT | Hard coral |
| Siderastrea radians | SRAD | Hard coral |
| Stylaster roseus | SROS | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Agelas clathrodes | ACLA | Other Invertebrates |
| Agelas conifera/tubulata | ACON/ATUB | Other Invertebrates |
| Anemone | ANEM | Other Invertebrates |
| Antillogorgia spp. | ANTSPP | Other Invertebrates |
| Aplysina fulva/cauliformis | APLY | Other Invertebrates |
| Ball Sponge | BALLSPO | Other Invertebrates |
| Sponges: Massive forms: Barrels | BARRELSPO | Other Invertebrates |
| Briareum asbestinum | BASB | Other Invertebrates |
| Boring sponge | BORSPO | Other Invertebrates |
| Echinoderms: Ophiuroids:Brittle / snake stars | BRIT | Other Invertebrates |
| Condylactis gigantea | CGIG | Other Invertebrates |
| Cliona spp. | CLION | Other Invertebrates |
| Sponge: Cliona | CLIOSPP | Other Invertebrates |
| Callyspongia plicifera | CPLI | Other Invertebrates |
| Crustacea | CRUS | Other Invertebrates |
| Diadema antillarum | DANT | Other Invertebrates |
| Erythropodium caribaeorum | ECAR | Other Invertebrates |
| Encrusting sponge | ENCSPO | Other Invertebrates |
| Encrusting gorgonian | ENGO | Other Invertebrates |
| Erect gorgonians | ERGR | Other Invertebrates |
| Gorgonia spp. | GORG | Other Invertebrates |
| Hydroid | HYDR | Other Invertebrates |
| Iotrochota birotulata | IBIR | Other Invertebrates |
| Sponges: Massive forms: Irregular | IRREGSPO | Other Invertebrates |
| Millepora alcicornis | MALC | Other Invertebrates |
| Millepora complanata | MCOM | Other Invertebrates |
| Niphates erecta | NERE | Other Invertebrates |
| Palythoa | PALY | Other Invertebrates |
| Palythoa caribaeorum | PCAR | Other Invertebrates |
| Plexauridae | PLEX | Other Invertebrates |
| Pterogorgia | PTER | Other Invertebrates |
| Sponges: Branching, Rope Forms | ROPESPO | Other Invertebrates |
| Soft Coral plumes | SCPL | Other Invertebrates |
| Trididemum solidum. | TSOL | Other Invertebrates |
| Polychaete - tube worm | TUBE | Other Invertebrates |
| Tube or Rod Sponge | TUBE/RODSP | Other Invertebrates |
| Unknown Invertebrate | UNKINV | Other Invertebrates |
| Sponge | UNKSPON | Other Invertebrates |
| Echinoderms: sea urchin | URCH | Other Invertebrates |
| Sponges: Vase | VASESPO | Other Invertebrates |
| Sand | SAND | Soft Substrate |
| Bare Substrate | BARESUB | Hard Substrate |
| Dead coral | DC | Hard Substrate |
| Cyanobacteria | CYAN | Other |
| Marine Debris | DEBRIS | Other |
| Fish | FISH | Other |
| Rubble | RUBB | Other |
| Unknown | UNK | Other |
| Unidentified Brown | BROWN | Algae |
| Branching and calcareous algae | CALC | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | DICT | Algae |
| Unidentified Green Algae | GREEN | Algae |
| Halimeda | HALI | Algae |
| Lobophora | LOBO | Algae |
| Macroalgae | MACRO | Algae |
| Red algae, filamentous | REDFIL | Algae |
| Sargassum | SARG | Algae |
| Thick turf algae | TTHICK | Algae |
| Grazed or thin turf | TTHIN | Algae |
| Turf overgrowing recently dead coral | TUCO | Algae |
| Turbinaria (algae) | TURB | Algae |
| Turf algae | TURF | Algae |
| Wrangelia | WRAN | Algae |