| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AAGA | Hard coral |
| Acropora cervicornis | ACER | Hard coral |
| Agaricia fragilis | AFRA | Hard coral |
| Agaricia humilis | AHUM | Hard coral |
| Agaricia lamarcki | ALAM | Hard coral |
| Acropora palmata | APALM | Hard coral |
| Agaricia tenuifolia | ATEN | Hard coral |
| Bleached Hard Coral | BL_HC | Hard coral |
| Colpophyllia natans | CNAT | Hard coral |
| Dendrogyra cylindrus | DCYL | Hard coral |
| Diploria labyrinthiformis | DLAB | Hard coral |
| Dichocoenia stokesi | DSTO | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Fully Bleached Agaricia agricites | FBAA | Hard coral |
| Fully Bleached Diploria labyrinthiformis | FBDL | Hard coral |
| Fully Bleached Orbicella Annularis | FBOA | Hard coral |
| Fully Bleached Orbicella faveolata | FBOF | Hard coral |
| Favia fragum | FFRA | Hard coral |
| Helioseris cucullata | HCUC | Hard coral |
| Madracis auretenra | MAUR | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Madracis decactis | MDEC | Hard coral |
| Mycetophyllia ferox | MFER | Hard coral |
| Meandrina meandrites | MMEA | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Orbicella franksi | OFRA | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Partially Bleached Agaricia agricites | PBAA | Hard coral |
| Partially Bleached Diploria labyrinthiformis | PBDL | Hard coral |
| Partially Bleached Coral | PB_HC | Hard coral |
| Partially Bleached Orbicella Annularis | PBOA | Hard coral |
| Partially Bleached Orbicella faveolata | PBOF | Hard coral |
| Pseudodiploria clivosa | PCLIV | Hard coral |
| Porites porites | PPOR | Hard coral |
| Pseudodiploria strigosa | PSTRI | Hard coral |
| Recent Dead Coral | RD_HC | Hard coral |
| Solenastrea bournoni | SBOU | Hard coral |
| Scolymia | SCOL | Hard coral |
| Stephanocoenia intersepta | SINT | Hard coral |
| Siderastrea radians | SRAD | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Condylactis gigantea | CONGI | Other Invertebrates |
| Encrusting gorgonian | ENGR1 | Other Invertebrates |
| Erythropodium caribaeorum | ERYCAR | Other Invertebrates |
| Gorgonia spp. | GORG | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Palythoa | PALYTHO | Other Invertebrates |
| Plexaurella spp. | PLEX | Other Invertebrates |
| Pseudoplexaura spp. | PSPLEX | Other Invertebrates |
| Pseudopterogorgia | PSPTER | Other Invertebrates |
| Pterogorgia | PTER | Other Invertebrates |
| Soft Coral plumes | SCplu | Other Invertebrates |
| Boring sponge | SPBO | Other Invertebrates |
| Sponge | SPON | Other Invertebrates |
| Trididemum solidum. | TRID | Other Invertebrates |
| Sand | SAND | Soft Substrate |
| Bare Substrate | BARESUB | Hard Substrate |
| Dead coral | DC | Hard Substrate |
| Cyanobacteria | CYAN | Other |
| Unclear | DISCUSS | Other |
| Fish | FISH | Other |
| Rubble | RUBB | Other |
| TAPE | TAPE | Other |
| Tape_TWS | TAPE2 | Other |
| Unknown | UNK | Other |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | DIC | Algae |
| Halimeda | Halimeda | Algae |
| Lobophora | LOBO | Algae |
| Macroalgae | MA | Algae |
| Benthic Microalgae on Sand | MicroS | Algae |
| Sargassum | SARG | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | TURF | Algae |
| Wrangelia | WRA | Algae |
| Halophila stipulacea | HalophStip | Seagrass |
| Thalassia testudinum | ThalTes | Seagrass |