| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AAGA | Hard coral |
| Agaricia agaricites - Bleached | AAGA_BL | Hard coral |
| Acropora cervicornis | ACER | Hard coral |
| Acropora cervicornis - bleached | ACER_BL | Hard coral |
| Agaricia fragilis | AFRA | Hard coral |
| Agaricia | AGAR | Hard coral |
| Bleached Agaricia | AGAR_BL | Hard coral |
| Agaricia grahamae | AGRA | Hard coral |
| Agaricia humilis | AHUM | Hard coral |
| Agaricia lamarcki | ALAM | Hard coral |
| Agaricia Lamarcki - Bleached | ALAM_BL | Hard coral |
| Acropora palmata | APAL | Hard coral |
| Acropora palmata - Bleached | APAL_BL | Hard coral |
| Acropora prolifera | APRO | Hard coral |
| Agaricia tenuifolia | ATEN | Hard coral |
| Agaricia tenuifolia - Bleached | ATEN_BL | Hard coral |
| Colpophyllia natans | CNAT | Hard coral |
| Bleached Colpophyllia natans | CNAT_BL | Hard coral |
| Dendrogyra cylindrus | DCYL | Hard coral |
| Diploria labyrinthiformis | DLAB | Hard coral |
| Diploria labyrinthiformis - Bleached | DLAB_BL | Hard coral |
| Dichocoenia stellaris | DSTE | Hard coral |
| Dichocoenia stokesi | DSTO | Hard coral |
| Bleached Dichocoenia stokesi | DSTO_BL | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Eusmilia fastigiata - Bleached | EFAS_BL | Hard coral |
| Favia fragum | FFRA | Hard coral |
| Favia fragum - Bleached | FFRA_BL | Hard coral |
| Helioseris cucullata | HCUC | Hard coral |
| Isophyllia sinuosa | ISIN | Hard coral |
| Bleached Isophyllia | ISOP_BL | Hard coral |
| Mycetophyllia aliciae | MALI | Hard coral |
| Mycetophyllia aliciae - Bleached | MALI_BL | Hard coral |
| Mussa angulosa | MANG | Hard coral |
| Manicina areolata | MARE | Hard coral |
| Madracis auretenra | MAUR | Hard coral |
| Madracis aurentenra - Bleached | MAUR_BL | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Montastraea cavernosa - Bleached | MCAV_BL | Hard coral |
| Mycetophyllia danaana | MDAN | Hard coral |
| Madracis decacitis | MDEC | Hard coral |
| Madracis decactis - Bleached | MDEC_BL | Hard coral |
| Mycetophyllia ferox | MFER | Hard coral |
| Millepora spp. - Bleached | MILL_BL | Hard coral |
| Mycetophyllia lamarckana | MLAM | Hard coral |
| Meandrina meandrites | MMEA | Hard coral |
| Bleached Meandrina | MMEA_BL | Hard coral |
| Madracis senaria | MSEN | Hard coral |
| Mycetophyllia | MYCE | Hard coral |
| Mycetophyllia - bleached | MYCE_BL | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Bleached Orbicella annularis | OANN_BL | Hard coral |
| Oculina diffusa | ODIF | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Bleached Orbicella faveolata | OFAV_BL | Hard coral |
| Orbicella franksi | OFRA | Hard coral |
| Bleached Orbicella franksi | OFRA_BL | Hard coral |
| Orbicella spp. | ORBI | Hard coral |
| Orbicella spp. - Bleached | ORBI_BL | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Bleached Porites astreoides | PAST_BL | Hard coral |
| Pseudodiploria clivosa | PCLI | Hard coral |
| Bleached Pseudodiploria clivosa | PCLI_BL | Hard coral |
| Porites divaricata | PDIV | Hard coral |
| Porites furcata | PFUR | Hard coral |
| Porites porites | PPOR | Hard coral |
| Porites porites - bleached | PPOR_BL | Hard coral |
| Pseudodiploria strigosa- Bleached | PSTR_BL | Hard coral |
| Pseudodiploria strigosa | PSTRI | Hard coral |
| Solenastrea bournoni | SBOU | Hard coral |
| Coral | SCLER | Hard coral |
| Scolymia cubensis | SCUB | Hard coral |
| Scolymia cubensis - Bleached | SCUB_BL | Hard coral |
| Solenastrea hyades | SHYA | Hard coral |
| Stephanocoenia intersepta | SINT | Hard coral |
| Stephanocoenia intersepta - Bleached | SINT_BL | Hard coral |
| Scolymia lacera | SLAC | Hard coral |
| Siderastrea radians | SRAD | Hard coral |
| Bleached Siderastrea radians | SRAD_BL | Hard coral |
| Stylaster roseus | SROS | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Siderastrea siderea - Bleached | SSID_BL | Hard coral |
| Pseudopterogorgia | ANTI | Other Invertebrates |
| Ascidian | ASCID | Other Invertebrates |
| Briareum | BRIA | Other Invertebrates |
| Clionid spp. | CLIO | Other Invertebrates |
| Erythropodium caribaeorum | ECAR | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Eunicea spp. | EUNI | Other Invertebrates |
| Gorgoniidae | GORG | Other Invertebrates |
| Gorgonia spp. | GVEN | Other Invertebrates |
| Hydrozoa | HYDRO | Other Invertebrates |
| Iciligorgia spp. | ICIL | Other Invertebrates |
| Millepora alcicornis | MALC | Other Invertebrates |
| Millepora complanata | MCOM | Other Invertebrates |
| Millepora | MILLE | Other Invertebrates |
| Millepora squarrosa | MSQU | Other Invertebrates |
| Muricea spp. | MURI | Other Invertebrates |
| Muriceopsis spp. | MURO | Other Invertebrates |
| Other invertebrate | Other Inv | Other Invertebrates |
| Palythoa | PALY | Other Invertebrates |
| Plexaurella spp. | PLEL | Other Invertebrates |
| Plexaura spp. | PLEX | Other Invertebrates |
| Soft Coral plumes | PLUME | Other Invertebrates |
| Pseudoplexaura spp. | PSEUGORG | Other Invertebrates |
| Pterogorgia | PTER | Other Invertebrates |
| Sponges: Massive forms: Barrels | SPGB | Other Invertebrates |
| Sponge Other | SpgOth | Other Invertebrates |
| Sponges: Branching, Rope Forms | SPGR | Other Invertebrates |
| Tube or Rod Sponge | SPGT | Other Invertebrates |
| Sponges: Vase | SPGV | Other Invertebrates |
| Zoanthid | ZOAN | Other Invertebrates |
| Sea Rod | ROD | Soft Substrate |
| Loose Substrate: Rubble | RUB | Soft Substrate |
| Sand | Sand | Soft Substrate |
| Limestone free of overgrowth | LIME | Hard Substrate |
| Cyanobacteria films | CYAN | Other |
| Equipment | EQ | Other |
| Fish | FISH | Other |
| Shadow | SHAD | Other |
| Unknown | Unk | Other |
| Branching and calcareous algae | BRAN-CALC | Algae |
| Crustose coralline algae | CCA | Algae |
| Cyanobacterium sp. | Cya_spe | Algae |
| Dictyota | DICT | Algae |
| Halimeda spp. | HALI | Algae |
| Lobophora spp. | LOBO | Algae |
| Macroalgae | Macro | Algae |
| Turf overgrowing recently dead coral | RDC-T | Algae |
| Sargassum | SARG | Algae |
| Turbinaria (algae) | TURB | Algae |
| Turf algae | TURF | Algae |
| Seagrass | Seagrass | Seagrass |
| Syringodium filiforme | SFIL | Seagrass |
| Thalassia | THAL | Seagrass |