| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia agaricites | AAGA | Hard coral |
| Acropora cervicornis | ACER | Hard coral |
| Agaricia fragilis | AFRA | Hard coral |
| Agaricia spp. | AG | Hard coral |
| Agaricia humilis | AHUM | Hard coral |
| Agaricia lamarcki | ALAM | Hard coral |
| Acropora palmata | APAL | Hard coral |
| Acropora prolifera | APRO | Hard coral |
| Agaricia tenuifolia | ATEN | Hard coral |
| Agaricia undata | AUND | Hard coral |
| Cladocora arbuscula | CARB | Hard coral |
| Colpophyllia natans | CNAT | Hard coral |
| Dendrogyra cylindrus | DCYL | Hard coral |
| Diploria labyrinthiformis | DLAB | Hard coral |
| Dichocoenia stokesi | DSTO | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FFRA | Hard coral |
| Unidentified Hard Coral | HCoral | Hard coral |
| Helioseris cucullata | HCUC | Hard coral |
| Isophyllia rigida | IRIG | Hard coral |
| Isophyllia sinuosa | ISIN | Hard coral |
| Madracis | Madracis | Hard coral |
| Mycetophyllia aliciae | MALI | Hard coral |
| Mussa angulosa | MANG | Hard coral |
| Manicina areolata | MARE | Hard coral |
| Madracis auretenra | MAUR | Hard coral |
| Madracis carmabi | MCAR | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Mycetophyllia danaana | MDAN | Hard coral |
| Madracis decactis | MDEC | Hard coral |
| Mycetophyllia ferox | MFER | Hard coral |
| Madracis formosa | MFOR | Hard coral |
| Meandrina jacksoni | MJAC | Hard coral |
| Mycetophyllia lamarckana | MLAM | Hard coral |
| Meandrina meandrites | MMEA | Hard coral |
| Madracis pharensis | MPHA | Hard coral |
| Madracis senaria | MSEN | Hard coral |
| Mycetophyllia | Mycetophy | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Oculina arbuscula | OARB | Hard coral |
| Oculina diffusa | ODIF | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Orbicella franksi | OFRA | Hard coral |
| Oculina patagonica | OPAT | Hard coral |
| Orbicella | Orbicella | Hard coral |
| Oculina robusta | OROB | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Porites branneri | PBRA | Hard coral |
| Pseudodiploria clivosa | PCLI | Hard coral |
| Porites colonensis | PCOL | Hard coral |
| Porites furcata | PFUR | Hard coral |
| Porites | Porites | Hard coral |
| Porites porites | PPOR | Hard coral |
| Pseudodiploria strigosa | PSTR | Hard coral |
| Recent Dead Coral | R_DEAD | Hard coral |
| Solenastrea bournoni | SBOU | Hard coral |
| Scolymia | Scolymia | Hard coral |
| Scolymia cubensis | SCUB | Hard coral |
| Solenastrea hyades | SHYA | Hard coral |
| Siderastrea | Siderastr | Hard coral |
| Stephanocoenia intersepta | SINT | Hard coral |
| Scolymia lacera | SLAC | Hard coral |
| Solenastrea | Solenastre | Hard coral |
| Siderastrea radians | SRAD | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Siderastrea stellata | SSTE | Hard coral |
| Tubastraea coccinea | TCOC | Hard coral |
| Anemones | Anemones | Other Invertebrates |
| Antillogorgia americana | AntiAme | Other Invertebrates |
| Antillogorgia spp. | ANTSPP | Other Invertebrates |
| balanus | balanus | Other Invertebrates |
| Briareum asbestinum | BRIASB | Other Invertebrates |
| Bryozoan | bryozoan | Other Invertebrates |
| Barrel Sponge | BSPo | Other Invertebrates |
| Davidaster rubiginosus | Davrub | Other Invertebrates |
| Diadema antillarum | Diadema | Other Invertebrates |
| Echinoderms | ECHINODERM | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Echinoderms: Ophiuroids | EOph | Other Invertebrates |
| Erythropodium caribaeorum | ERYCAR | Other Invertebrates |
| Echinoderms: Sea stars | ESStar | Other Invertebrates |
| Eudistoma obscuratum | Eudi obscu | Other Invertebrates |
| Eunicea flexuosa | EuFlex | Other Invertebrates |
| Eucidaris tribuloides | EuTri | Other Invertebrates |
| Molluscs: Gastropods | gastropod | Other Invertebrates |
| Sponge: globular | GLO1 | Other Invertebrates |
| Gorgonia ventalina | Gven | Other Invertebrates |
| Millepora alcicornis | M. alcicor | Other Invertebrates |
| Echinometra spp | MINV_Ech | Other Invertebrates |
| Octocorallia | Octocoral | Other Invertebrates |
| Oculina spp. | Oculina | Other Invertebrates |
| Palythoa caribaeorum | PCAR | Other Invertebrates |
| Polychaeta | POLYCH | Other Invertebrates |
| Pseudoplexaura porosa | Psepor | Other Invertebrates |
| Pseudoplexaura spp. | PSESPP | Other Invertebrates |
| Rope sponge | ROSP | Other Invertebrates |
| Sponge: Tubular | SpongeTUBO | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Zoanthus | ZOA | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Sediment | Sediment | Soft Substrate |
| Pebble / gravel: Biologenic: Coral rubble | SUPBR | Soft Substrate |
| Dead coral | D_coral | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Invasive octocoral | Invoct | Other |
| Unidentified | UNIden | Other |
| Algae (filamentous) | AL_filam | Algae |
| Algae (fleshy) | AL_fleshy | Algae |
| Algae | Algae | Algae |
| Calcareous algae | CALG | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Macroalgae | MAL | Algae |
| Turf algae | Turf | Algae |
| Syringodium filiforme | SyrFil | Seagrass |
| Thalassia testudinum | ThalTes | Seagrass |