| Name | Short Code | Functional Group |
|---|---|---|
| Agaricia spp. | AG | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Hard coral | HC | Hard coral |
| Montastrea spp. | Mont_spp | Hard coral |
| Orbicella | Orbicella | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites (branching) | Por_branch | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Siderastrea | Siderastr | Hard coral |
| Briozoo | Bryo-1 | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Erythropodium caribaeorum | ERYCAR | Other Invertebrates |
| Eunicea spp. | EUNSPP | Other Invertebrates |
| Gorgonia spp. | GORSPP | Other Invertebrates |
| Unidentified Octocoral | Octocora | Other Invertebrates |
| Palythoa caribaeorum | PCAR | Other Invertebrates |
| Plexaurella spp. | PLEXSPP | Other Invertebrates |
| Pseudopterogorgia | Pseudopter | Other Invertebrates |
| Pterogorgia | Pterogorg | Other Invertebrates |
| Red sponge | RedS | Other Invertebrates |
| Sponge: Cliona | SINV_SPO_C | Other Invertebrates |
| Sponges: Vase | SINV_SPO_V | Other Invertebrates |
| Tube or Rod Sponge | SPTU | Other Invertebrates |
| Unknown Sponge/Tunicate | SpTun | Other Invertebrates |
| Unknown Invertebrate | Unkinvert | Other Invertebrates |
| Unidentified orange sponge | UOS | Other Invertebrates |
| Sand and sediment | Mix | Soft Substrate |
| Sand | Sand | Soft Substrate |
| sandy mud | sand_mud | Soft Substrate |
| Sediment | Sediment | Soft Substrate |
| Pavement | Pavement | Hard Substrate |
| Unknown | Unk | Other |
| Brown Macroalgae | BrownM | Algae |
| Calcareous algae | CALG | Algae |
| Dictyota spp | Dict | Algae |
| Dictyota with Sediment | DictySed | Algae |
| Green fleshy algae | GFA | Algae |
| Lobophora spp. | Lob_spp | Algae |
| Red Macroalgae | RedM | Algae |
| Turf growing on hard substrate | TURFH | Algae |
| Turf and sand | Turf_sand | Algae |
| Turf with sediment | Turfsed | Algae |
| Unknown macroalgae | UnkMacroa | Algae |
| Upright fleshy macroalgae | UPMA | Algae |