| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Agaricia spp. | AG | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia fragilis | AgFra | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Other scleractinians | HC_other | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Montastrea cavernosa | MoCav | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycetophyllia lamarckana | MycetLam | Hard coral |
| Mycetophyllia | Mycetophy | Hard coral |
| Oculina diffusa | OCD | Hard coral |
| Oculina | Oculina | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Orbicella | Orbicella | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites colonensis | PORCOL | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria | PSEU | Hard coral |
| Pseudodiploria clivosa | PseuCliv | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Scolymia lacera | SCOLA | Hard coral |
| Siderastrea | Siderastr | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Siderastrea stellata | SidStel | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Anemones | An_STRI | Other Invertebrates |
| balanus | balanus | Other Invertebrates |
| Bivalve | Bivalve | Other Invertebrates |
| Bryozoan | bryozoan | Other Invertebrates |
| Barrel Sponge | BSPo | Other Invertebrates |
| Cliona delitrix | CD | Other Invertebrates |
| Colonial anemones: Corallimorphs | CNCAC | Other Invertebrates |
| Callyspongia vaginalis | CVa | Other Invertebrates |
| Davidaster rubiginosus | Davrub | Other Invertebrates |
| Diadema antillarum | Diad | Other Invertebrates |
| Echinometra viridis | Ech_vir | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Erythropodium caribaeorum | ERYCAR | Other Invertebrates |
| Echinoderms: Sea stars | ESS | Other Invertebrates |
| Eudistoma obscuratum | Eudi obscu | Other Invertebrates |
| Eunicea flexuosa | EuFlex | Other Invertebrates |
| Eunicea laciniata | Eunlac | Other Invertebrates |
| Eunicea spp. | EUNSPP | Other Invertebrates |
| Eucidaris tribuloides | EuTri | Other Invertebrates |
| Molluscs: Gastropods | gastropod | Other Invertebrates |
| Sponge: globular | GLO1 | Other Invertebrates |
| Gorgonacea | GORGON | Other Invertebrates |
| Holothuroidea | HOL | Other Invertebrates |
| Ircinia sp. | IRCINIA | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Echinometra spp | MINV_Ech | Other Invertebrates |
| Mycale laevis | MLAE | Other Invertebrates |
| Octocorallia | Octocoral | Other Invertebrates |
| Rhodactis osculifera | OI-ROSC | Other Invertebrates |
| Zoanthus pulchellus | OI-ZPUL | Other Invertebrates |
| Palythoa caribaeorum | PCAR | Other Invertebrates |
| Polychaete_branching | Pct_br | Other Invertebrates |
| Plexaurella dichotoma | PlDic | Other Invertebrates |
| Plexaura flexuosa | Plefle | Other Invertebrates |
| Plexaura spp. | PLESPP | Other Invertebrates |
| Plexaurella spp. | PLEXSPP | Other Invertebrates |
| Polychaeta (calcareous tube) | Polcal | Other Invertebrates |
| Polychaeta (feathered) | Polfea | Other Invertebrates |
| Polychaeta | POLYCH | Other Invertebrates |
| Pseudoceratina_sp | PsCer | Other Invertebrates |
| Pseudoplexaura porosa | Psepor | Other Invertebrates |
| Pseudoplexaura spp. | PSESPP | Other Invertebrates |
| Pseudoceratina crassa | Pseudo_cra | Other Invertebrates |
| Rope sponge | ROSP | Other Invertebrates |
| Spirobranchus sp. | Spi_spe | Other Invertebrates |
| Clathria sp. | SpongeClat | Other Invertebrates |
| Sponge: Tubular | SpongeTUBO | Other Invertebrates |
| Ircinia strobilina | SPON-IRCI2 | Other Invertebrates |
| Stichodactyla helianthus | Stichodact | Other Invertebrates |
| Telesto sp. | Tele | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Zoanthus | ZOA | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Sediment | Sediment | Soft Substrate |
| Pebble / gravel: Biologenic: Coral rubble | SUPBR | Soft Substrate |
| Dead coral | D_coral | Hard Substrate |
| Coral:Rock | Rc | Hard Substrate |
| Sand and dead coral | sadc | Other |
| Unidentified | UNIden | Other |
| Algae (filamentous) | AL_filam | Algae |
| Unidentified algae | ALGA | Algae |
| Articulated coralline algae | ArtCA | Algae |
| Calcareous algae | CALG | Algae |
| Caulerpa racemosa | CauRac | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota spp | Dict | Algae |
| Galaxaura spp. | Gaspp | Algae |
| Halimeda opuntia | HOpu | Algae |
| Lobophora spp. | Lob_spp | Algae |
| Padina | Padina | Algae |
| Turf algae | Turf | Algae |
| Udotea spp. | UDOT | Algae |
| Thalassia testudinum | ThalTes | Seagrass |