| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora | Acropora | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Acropora prolifera | AcrPro | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia | Agaricia | Hard coral |
| Agaricia fragilis | AgFra | Hard coral |
| Agaricia grahamae | AgGra | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Bleached Hard Coral | B_HC | Hard coral |
| Cladocora arbuscula | ClaArb | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FaviaFrag | Hard coral |
| Helioseris cucullata | HeCuc | Hard coral |
| Isophyllia rigida | IsophRig | Hard coral |
| Isophyllia sinuosa | IsophSin | Hard coral |
| Isophyllia | Isophyllia | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis auretenra | MadAure | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Madracis formosa | MadForm | Hard coral |
| Madracis pharensis | MadPhar | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycetophyllia aliciae | MycetAli | Hard coral |
| Mycetophyllia danaana | MycetDan | Hard coral |
| Mycetophyllia ferox | MycetFer | Hard coral |
| Mycetophyllia lamarckana | MycetLam | Hard coral |
| Mycetophyllia | Mycetophy | Hard coral |
| Oculina diffusa | OCD | Hard coral |
| Oculina | Oculina | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Orbicella | Orbicella | Hard coral |
| Oculina robusta | Orob | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites divaricata | PorDiv | Hard coral |
| Porites furcata | PorFurc | Hard coral |
| Porites | Porites | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria clivosa | PseuCliv | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Recent Dead Coral | RD_HC | Hard coral |
| Scolymia cubensis | SCOCUB | Hard coral |
| Scolymia | SCOL | Hard coral |
| Scolymia lacera | SCOLA | Hard coral |
| Scolymia wellsi | SCOW | Hard coral |
| Siderastrea | Siderastr | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Solenastrea hyades | SOL | Hard coral |
| Solenastrea bournoni | SOLBOU | Hard coral |
| Solenastrea | SOLE | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Tubastraea coccinea | TUBCOC | Hard coral |
| Encrusting sponge | ENSP | Other Invertebrates |
| Erect sponge | ERSP | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Millepora striata | MILS | Other Invertebrates |
| Millepora squarrosa | MIS | Other Invertebrates |
| Other Invertebrates | OR_Invert | Other Invertebrates |
| Other sessile invertebrates | OTH-SINV | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Soft coral_bleached | SOFT_BL | Other Invertebrates |
| Echinoderms: sea urchin | Urchins | Other Invertebrates |
| Mud | Mud | Soft Substrate |
| Sand | Sand | Soft Substrate |
| CRED-CCA growing on hard substrate | *CCAH | Hard Substrate |
| Cyanobacteria | CYANOB | Other |
| All other | Other | Other |
| Rubble | Rubble | Other |
| Shadow | SHAD | Other |
| Transect hardware | Transect | Other |
| Trash | Trash | Other |
| Unclear | Unc | Other |
| Unknown | Unk | Other |
| Benthic Microalgae on Sand | BMA_sand | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| CCA_Dead | CCADEAD | Algae |
| Halimeda | Halimeda | Algae |
| Macroalgae | MAL | Algae |
| Turf algae | Turf | Algae |
| Turf and sand | Turf_sand | Algae |
| Seagrass | Seagrass | Seagrass |